Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25930 and BPHYT_RS25935 overlap by 4 nucleotides BPHYT_RS25935 and BPHYT_RS25940 are separated by 235 nucleotides BPHYT_RS25940 and BPHYT_RS25945 are separated by 227 nucleotides
BPHYT_RS25930: BPHYT_RS25930 - hypothetical protein, at 1,393,232 to 1,394,332
_RS25930
BPHYT_RS25935: BPHYT_RS25935 - type III secretion protein, at 1,394,329 to 1,396,242
_RS25935
BPHYT_RS25940: BPHYT_RS25940 - arylsulfate sulfotransferase, at 1,396,478 to 1,396,732
_RS25940
BPHYT_RS25945: BPHYT_RS25945 - hypothetical protein, at 1,396,960 to 1,397,223
_RS25945
Position (kb) 1394
1395
1396
1397 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1394.624 kb on + strand, within BPHYT_RS25935 at 1395.182 kb on - strand, within BPHYT_RS25935 at 1395.927 kb on - strand, within BPHYT_RS25935 at 1396.166 kb on - strand at 1396.966 kb on + strand at 1397.199 kb on + strand at 1397.200 kb on - strand at 1397.241 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 1,394,624 + BPHYT_RS25935 0.15 -3.2 1,395,182 - BPHYT_RS25935 0.45 -0.9 1,395,927 - BPHYT_RS25935 0.83 +0.2 1,396,166 - -0.2 1,396,966 + +0.6 1,397,199 + +0.9 1,397,200 - -2.5 1,397,241 + +1.0
Or see this region's nucleotide sequence