Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24665

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24660 and BPHYT_RS24665 are separated by 35 nucleotidesBPHYT_RS24665 and BPHYT_RS24670 overlap by 4 nucleotidesBPHYT_RS24670 and BPHYT_RS24675 overlap by 4 nucleotides BPHYT_RS24660: BPHYT_RS24660 - ABC transporter ATP-binding protein, at 1,102,382 to 1,103,455 _RS24660 BPHYT_RS24665: BPHYT_RS24665 - ABC transporter permease, at 1,103,491 to 1,104,378 _RS24665 BPHYT_RS24670: BPHYT_RS24670 - ABC transporter permease, at 1,104,375 to 1,105,334 _RS24670 BPHYT_RS24675: BPHYT_RS24675 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,105,331 to 1,106,425 _RS24675 Position (kb) 1103 1104 1105Strain fitness (log2 ratio) -2 -1 0 1at 1102.791 kb on + strand, within BPHYT_RS24660at 1102.791 kb on + strand, within BPHYT_RS24660at 1102.791 kb on + strand, within BPHYT_RS24660at 1102.792 kb on - strand, within BPHYT_RS24660at 1102.792 kb on - strand, within BPHYT_RS24660at 1103.444 kb on + strandat 1104.024 kb on - strand, within BPHYT_RS24665at 1104.615 kb on + strand, within BPHYT_RS24670at 1104.796 kb on + strand, within BPHYT_RS24670at 1105.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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1,102,791 + BPHYT_RS24660 0.38 +0.2
1,102,791 + BPHYT_RS24660 0.38 -0.9
1,102,791 + BPHYT_RS24660 0.38 +0.3
1,102,792 - BPHYT_RS24660 0.38 +1.3
1,102,792 - BPHYT_RS24660 0.38 -0.0
1,103,444 + -0.6
1,104,024 - BPHYT_RS24665 0.60 -2.1
1,104,615 + BPHYT_RS24670 0.25 -0.2
1,104,796 + BPHYT_RS24670 0.44 +0.6
1,105,353 + +0.3

Or see this region's nucleotide sequence