Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24035 and BPHYT_RS24040 are separated by 19 nucleotides BPHYT_RS24040 and BPHYT_RS24045 are separated by 21 nucleotides BPHYT_RS24045 and BPHYT_RS24050 are separated by 88 nucleotides
BPHYT_RS24035: BPHYT_RS24035 - ATP-binding protein, at 957,195 to 958,064
_RS24035
BPHYT_RS24040: BPHYT_RS24040 - amino acid ABC transporter, at 958,084 to 958,746
_RS24040
BPHYT_RS24045: BPHYT_RS24045 - amino acid ABC transporter, at 958,768 to 959,418
_RS24045
BPHYT_RS24050: BPHYT_RS24050 - amino acid ABC transporter, at 959,507 to 960,334
_RS24050
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 958.064 kb on + strand at 958.065 kb on - strand at 958.230 kb on + strand, within BPHYT_RS24040 at 958.231 kb on - strand, within BPHYT_RS24040 at 958.521 kb on - strand, within BPHYT_RS24040 at 958.571 kb on + strand, within BPHYT_RS24040 at 958.835 kb on + strand, within BPHYT_RS24045 at 959.195 kb on + strand, within BPHYT_RS24045 at 959.195 kb on + strand, within BPHYT_RS24045 at 959.434 kb on + strand at 959.511 kb on + strand at 959.673 kb on + strand, within BPHYT_RS24050 at 959.994 kb on + strand, within BPHYT_RS24050 at 959.995 kb on - strand, within BPHYT_RS24050
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 958,064 + +0.9 958,065 - -3.2 958,230 + BPHYT_RS24040 0.22 -0.6 958,231 - BPHYT_RS24040 0.22 -0.2 958,521 - BPHYT_RS24040 0.66 -0.5 958,571 + BPHYT_RS24040 0.73 +0.9 958,835 + BPHYT_RS24045 0.10 -1.5 959,195 + BPHYT_RS24045 0.66 -1.5 959,195 + BPHYT_RS24045 0.66 -0.9 959,434 + +0.7 959,511 + +0.8 959,673 + BPHYT_RS24050 0.20 +1.9 959,994 + BPHYT_RS24050 0.59 -0.1 959,995 - BPHYT_RS24050 0.59 +0.9
Or see this region's nucleotide sequence