Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23220 and BPHYT_RS23225 are separated by 113 nucleotides BPHYT_RS23225 and BPHYT_RS23230 are separated by 30 nucleotides BPHYT_RS23230 and BPHYT_RS23235 are separated by 185 nucleotides BPHYT_RS23235 and BPHYT_RS23240 are separated by 350 nucleotides
BPHYT_RS23220: BPHYT_RS23220 - hypothetical protein, at 774,648 to 775,379
_RS23220
BPHYT_RS23225: BPHYT_RS23225 - hypothetical protein, at 775,493 to 775,699
_RS23225
BPHYT_RS23230: BPHYT_RS23230 - histidine kinase, at 775,730 to 777,703
_RS23230
BPHYT_RS23235: BPHYT_RS23235 - hypothetical protein, at 777,889 to 778,272
_RS23235
BPHYT_RS23240: BPHYT_RS23240 - DNA-binding protein, at 778,623 to 778,901
_RS23240
Position (kb) 775
776
777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 774.741 kb on + strand, within BPHYT_RS23220 at 775.111 kb on - strand, within BPHYT_RS23220 at 775.313 kb on + strand at 775.608 kb on - strand, within BPHYT_RS23225 at 775.610 kb on + strand, within BPHYT_RS23225 at 775.752 kb on + strand at 776.257 kb on - strand, within BPHYT_RS23230 at 777.315 kb on + strand, within BPHYT_RS23230 at 777.714 kb on + strand at 777.714 kb on + strand at 777.784 kb on - strand at 778.296 kb on + strand at 778.301 kb on - strand at 778.323 kb on - strand at 778.345 kb on + strand at 778.431 kb on + strand at 778.431 kb on + strand at 778.467 kb on - strand at 778.514 kb on + strand at 778.514 kb on + strand at 778.515 kb on - strand at 778.523 kb on + strand at 778.559 kb on + strand at 778.605 kb on + strand at 778.611 kb on - strand at 778.622 kb on + strand at 778.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 774,741 + BPHYT_RS23220 0.13 +0.1 775,111 - BPHYT_RS23220 0.63 -1.3 775,313 + -0.7 775,608 - BPHYT_RS23225 0.56 +0.2 775,610 + BPHYT_RS23225 0.57 -0.8 775,752 + -0.2 776,257 - BPHYT_RS23230 0.27 -1.7 777,315 + BPHYT_RS23230 0.80 -0.7 777,714 + -0.8 777,714 + -0.5 777,784 - +0.5 778,296 + -0.5 778,301 - -2.9 778,323 - -2.4 778,345 + -0.2 778,431 + +1.3 778,431 + -0.5 778,467 - +0.6 778,514 + -0.6 778,514 + +1.3 778,515 - +0.7 778,523 + -0.5 778,559 + -1.0 778,605 + +0.8 778,611 - -0.6 778,622 + -2.3 778,623 - -2.4
Or see this region's nucleotide sequence