Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22930 and BPHYT_RS22935 are separated by 26 nucleotides BPHYT_RS22935 and BPHYT_RS22940 overlap by 4 nucleotides BPHYT_RS22940 and BPHYT_RS22945 are separated by 1 nucleotides BPHYT_RS22945 and BPHYT_RS22950 are separated by 53 nucleotides
BPHYT_RS22930: BPHYT_RS22930 - type II secretion system protein, at 703,406 to 704,362
_RS22930
BPHYT_RS22935: BPHYT_RS22935 - fatty acid hydroxylase, at 704,389 to 705,255
_RS22935
BPHYT_RS22940: BPHYT_RS22940 - pilus assembly protein TadE, at 705,252 to 705,782
_RS22940
BPHYT_RS22945: BPHYT_RS22945 - pilus assembly protein TadE, at 705,784 to 706,413
_RS22945
BPHYT_RS22950: BPHYT_RS22950 - von Willebrand factor A, at 706,467 to 707,822
_RS22950
Position (kb) 705
706 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 704.374 kb on - strand at 704.563 kb on + strand, within BPHYT_RS22935 at 704.563 kb on + strand, within BPHYT_RS22935 at 704.742 kb on + strand, within BPHYT_RS22935 at 704.743 kb on - strand, within BPHYT_RS22935 at 704.743 kb on - strand, within BPHYT_RS22935 at 704.743 kb on - strand, within BPHYT_RS22935 at 704.857 kb on + strand, within BPHYT_RS22935 at 704.936 kb on - strand, within BPHYT_RS22935 at 705.514 kb on - strand, within BPHYT_RS22940 at 705.630 kb on + strand, within BPHYT_RS22940 at 705.630 kb on + strand, within BPHYT_RS22940 at 705.887 kb on - strand, within BPHYT_RS22945 at 706.051 kb on + strand, within BPHYT_RS22945 at 706.052 kb on - strand, within BPHYT_RS22945 at 706.322 kb on + strand, within BPHYT_RS22945 at 706.393 kb on + strand at 706.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 704,374 - -0.5 704,563 + BPHYT_RS22935 0.20 -1.1 704,563 + BPHYT_RS22935 0.20 +3.9 704,742 + BPHYT_RS22935 0.41 -0.6 704,743 - BPHYT_RS22935 0.41 +0.4 704,743 - BPHYT_RS22935 0.41 +1.2 704,743 - BPHYT_RS22935 0.41 -0.9 704,857 + BPHYT_RS22935 0.54 -1.3 704,936 - BPHYT_RS22935 0.63 -0.1 705,514 - BPHYT_RS22940 0.49 -2.1 705,630 + BPHYT_RS22940 0.71 +0.0 705,630 + BPHYT_RS22940 0.71 -0.8 705,887 - BPHYT_RS22945 0.16 -0.1 706,051 + BPHYT_RS22945 0.42 +0.6 706,052 - BPHYT_RS22945 0.43 +0.8 706,322 + BPHYT_RS22945 0.85 +1.0 706,393 + -0.5 706,599 - +0.2
Or see this region's nucleotide sequence