Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21440 and BPHYT_RS21445 are separated by 18 nucleotides BPHYT_RS21445 and BPHYT_RS21450 are separated by 48 nucleotides
BPHYT_RS21440: BPHYT_RS21440 - sugar ABC transporter permease, at 368,163 to 369,011
_RS21440
BPHYT_RS21445: BPHYT_RS21445 - sugar ABC transporter ATP-binding protein, at 369,030 to 370,382
_RS21445
BPHYT_RS21450: BPHYT_RS21450 - glycosyl transferase family 1, at 370,431 to 373,142
_RS21450
Position (kb) 369
370
371 Strain fitness (log2 ratio) -1
0
1
2 at 368.171 kb on + strand at 368.514 kb on + strand, within BPHYT_RS21440 at 368.514 kb on + strand, within BPHYT_RS21440 at 368.515 kb on - strand, within BPHYT_RS21440 at 368.627 kb on - strand, within BPHYT_RS21440 at 368.749 kb on - strand, within BPHYT_RS21440 at 368.920 kb on + strand, within BPHYT_RS21440 at 369.096 kb on + strand at 369.097 kb on - strand at 369.097 kb on - strand at 369.097 kb on - strand at 369.125 kb on + strand at 369.501 kb on + strand, within BPHYT_RS21445 at 369.501 kb on + strand, within BPHYT_RS21445 at 369.502 kb on - strand, within BPHYT_RS21445 at 370.261 kb on - strand at 370.267 kb on - strand at 370.315 kb on - strand at 370.369 kb on + strand at 370.457 kb on + strand at 370.903 kb on - strand, within BPHYT_RS21450 at 371.059 kb on - strand, within BPHYT_RS21450 at 371.245 kb on - strand, within BPHYT_RS21450 at 371.281 kb on - strand, within BPHYT_RS21450 at 371.358 kb on + strand, within BPHYT_RS21450 at 371.358 kb on + strand, within BPHYT_RS21450
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 368,171 + +0.3 368,514 + BPHYT_RS21440 0.41 -0.2 368,514 + BPHYT_RS21440 0.41 -1.4 368,515 - BPHYT_RS21440 0.41 -0.8 368,627 - BPHYT_RS21440 0.55 +0.1 368,749 - BPHYT_RS21440 0.69 +0.3 368,920 + BPHYT_RS21440 0.89 -0.8 369,096 + -0.1 369,097 - +0.4 369,097 - +0.1 369,097 - -0.5 369,125 + +0.7 369,501 + BPHYT_RS21445 0.35 +0.6 369,501 + BPHYT_RS21445 0.35 +1.4 369,502 - BPHYT_RS21445 0.35 +0.4 370,261 - +0.0 370,267 - -0.9 370,315 - +0.8 370,369 + -0.3 370,457 + -0.8 370,903 - BPHYT_RS21450 0.17 -1.3 371,059 - BPHYT_RS21450 0.23 +2.1 371,245 - BPHYT_RS21450 0.30 +0.0 371,281 - BPHYT_RS21450 0.31 -1.2 371,358 + BPHYT_RS21450 0.34 +2.0 371,358 + BPHYT_RS21450 0.34 +0.3
Or see this region's nucleotide sequence