Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21290 and BPHYT_RS21295 are separated by 143 nucleotides BPHYT_RS21295 and BPHYT_RS21300 are separated by 45 nucleotides BPHYT_RS21300 and BPHYT_RS21305 are separated by 139 nucleotides
BPHYT_RS21290: BPHYT_RS21290 - serine acetyltransferase, at 336,360 to 337,286
_RS21290
BPHYT_RS21295: BPHYT_RS21295 - AraC family transcriptional regulator, at 337,430 to 338,251
_RS21295
BPHYT_RS21300: BPHYT_RS21300 - membrane protein, at 338,297 to 338,812
_RS21300
BPHYT_RS21305: BPHYT_RS21305 - hypothetical protein, at 338,952 to 339,455
_RS21305
Position (kb) 337
338
339 Strain fitness (log2 ratio) -1
0
1 at 336.574 kb on - strand, within BPHYT_RS21290 at 337.029 kb on + strand, within BPHYT_RS21290 at 337.029 kb on + strand at 337.135 kb on - strand, within BPHYT_RS21290 at 337.402 kb on - strand at 337.685 kb on + strand, within BPHYT_RS21295 at 338.084 kb on + strand, within BPHYT_RS21295 at 338.084 kb on + strand, within BPHYT_RS21295 at 338.085 kb on - strand, within BPHYT_RS21295 at 338.232 kb on - strand at 338.420 kb on - strand, within BPHYT_RS21300 at 338.466 kb on - strand, within BPHYT_RS21300 at 338.536 kb on - strand, within BPHYT_RS21300 at 338.855 kb on + strand at 339.074 kb on - strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.172 kb on + strand, within BPHYT_RS21305 at 339.173 kb on - strand, within BPHYT_RS21305 at 339.199 kb on + strand, within BPHYT_RS21305 at 339.199 kb on + strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.201 kb on + strand, within BPHYT_RS21305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 336,574 - BPHYT_RS21290 0.23 +0.3 337,029 + BPHYT_RS21290 0.72 +0.7 337,029 + -0.9 337,135 - BPHYT_RS21290 0.84 -0.1 337,402 - -0.8 337,685 + BPHYT_RS21295 0.31 +1.4 338,084 + BPHYT_RS21295 0.80 +0.9 338,084 + BPHYT_RS21295 0.80 -0.1 338,085 - BPHYT_RS21295 0.80 -0.6 338,232 - -0.9 338,420 - BPHYT_RS21300 0.24 -0.5 338,466 - BPHYT_RS21300 0.33 +0.8 338,536 - BPHYT_RS21300 0.46 -0.5 338,855 + +0.7 339,074 - BPHYT_RS21305 0.24 -1.5 339,131 + BPHYT_RS21305 0.36 +0.0 339,131 + BPHYT_RS21305 0.36 -0.4 339,131 + BPHYT_RS21305 0.36 -1.1 339,172 + BPHYT_RS21305 0.44 +0.7 339,173 - BPHYT_RS21305 0.44 -0.0 339,199 + BPHYT_RS21305 0.49 -0.6 339,199 + BPHYT_RS21305 0.49 +0.8 339,200 - BPHYT_RS21305 0.49 +0.5 339,200 - BPHYT_RS21305 0.49 +0.3 339,200 - BPHYT_RS21305 0.49 -0.6 339,200 - BPHYT_RS21305 0.49 -0.1 339,200 - BPHYT_RS21305 0.49 +0.8 339,200 - BPHYT_RS21305 0.49 -0.7 339,201 + BPHYT_RS21305 0.49 +1.1
Or see this region's nucleotide sequence