Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20605 and BPHYT_RS20610 are separated by 39 nucleotides BPHYT_RS20610 and BPHYT_RS20615 are separated by 165 nucleotides
BPHYT_RS20605: BPHYT_RS20605 - LysR family transcriptional regulator, at 181,701 to 182,837
_RS20605
BPHYT_RS20610: BPHYT_RS20610 - LysR family transcriptional regulator, at 182,877 to 183,788
_RS20610
BPHYT_RS20615: BPHYT_RS20615 - 2-nitropropane dioxygenase, at 183,954 to 185,054
_RS20615
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1
2
3 at 182.204 kb on - strand, within BPHYT_RS20605 at 182.227 kb on - strand, within BPHYT_RS20605 at 182.496 kb on + strand, within BPHYT_RS20605 at 182.496 kb on + strand, within BPHYT_RS20605 at 182.497 kb on - strand, within BPHYT_RS20605 at 182.652 kb on + strand, within BPHYT_RS20605 at 182.878 kb on + strand at 182.879 kb on - strand at 183.043 kb on + strand, within BPHYT_RS20610 at 183.112 kb on + strand, within BPHYT_RS20610 at 183.113 kb on - strand, within BPHYT_RS20610 at 183.197 kb on - strand, within BPHYT_RS20610 at 183.466 kb on + strand, within BPHYT_RS20610 at 183.467 kb on - strand, within BPHYT_RS20610 at 183.578 kb on - strand, within BPHYT_RS20610 at 183.745 kb on - strand at 183.924 kb on + strand at 183.924 kb on + strand at 183.924 kb on + strand at 183.924 kb on + strand at 183.925 kb on - strand at 183.925 kb on - strand at 183.929 kb on + strand at 183.930 kb on - strand at 184.257 kb on + strand, within BPHYT_RS20615 at 184.294 kb on - strand, within BPHYT_RS20615 at 184.294 kb on - strand, within BPHYT_RS20615 at 184.499 kb on + strand, within BPHYT_RS20615 at 184.499 kb on + strand, within BPHYT_RS20615
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 182,204 - BPHYT_RS20605 0.44 +2.0 182,227 - BPHYT_RS20605 0.46 -0.0 182,496 + BPHYT_RS20605 0.70 +0.6 182,496 + BPHYT_RS20605 0.70 -0.9 182,497 - BPHYT_RS20605 0.70 +0.1 182,652 + BPHYT_RS20605 0.84 +0.1 182,878 + -0.4 182,879 - +0.2 183,043 + BPHYT_RS20610 0.18 +1.5 183,112 + BPHYT_RS20610 0.26 +0.7 183,113 - BPHYT_RS20610 0.26 -0.4 183,197 - BPHYT_RS20610 0.35 +0.1 183,466 + BPHYT_RS20610 0.65 -1.1 183,467 - BPHYT_RS20610 0.65 +0.2 183,578 - BPHYT_RS20610 0.77 +3.3 183,745 - +0.2 183,924 + -0.5 183,924 + -0.4 183,924 + +1.4 183,924 + +0.6 183,925 - +0.0 183,925 - +0.4 183,929 + -0.5 183,930 - -1.1 184,257 + BPHYT_RS20615 0.28 +0.1 184,294 - BPHYT_RS20615 0.31 -0.3 184,294 - BPHYT_RS20615 0.31 +0.4 184,499 + BPHYT_RS20615 0.50 -0.9 184,499 + BPHYT_RS20615 0.50 +0.7
Or see this region's nucleotide sequence