Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19000 and BPHYT_RS19005 are separated by 86 nucleotides BPHYT_RS19005 and BPHYT_RS19010 are separated by 85 nucleotides BPHYT_RS19010 and BPHYT_RS19015 are separated by 21 nucleotides
BPHYT_RS19000: BPHYT_RS19000 - chemotaxis protein CheA, at 4,265,932 to 4,268,232
_RS19000
BPHYT_RS19005: BPHYT_RS19005 - chemotaxis protein CheY, at 4,268,319 to 4,268,696
_RS19005
BPHYT_RS19010: BPHYT_RS19010 - flagellar motor protein MotB, at 4,268,782 to 4,269,789
_RS19010
BPHYT_RS19015: BPHYT_RS19015 - flagellar motor protein MotA, at 4,269,811 to 4,270,671
_RS19015
Position (kb) 4268
4269
4270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4267.998 kb on + strand, within BPHYT_RS19000 at 4268.207 kb on + strand at 4268.208 kb on - strand at 4268.300 kb on - strand at 4268.300 kb on - strand at 4268.309 kb on + strand at 4268.309 kb on + strand at 4268.310 kb on - strand at 4268.320 kb on + strand at 4268.450 kb on + strand, within BPHYT_RS19005 at 4268.451 kb on - strand, within BPHYT_RS19005 at 4268.533 kb on + strand, within BPHYT_RS19005 at 4268.533 kb on + strand, within BPHYT_RS19005 at 4268.533 kb on + strand, within BPHYT_RS19005 at 4268.534 kb on - strand, within BPHYT_RS19005 at 4268.534 kb on - strand, within BPHYT_RS19005 at 4268.534 kb on - strand, within BPHYT_RS19005 at 4268.721 kb on - strand at 4268.721 kb on - strand at 4269.107 kb on + strand, within BPHYT_RS19010 at 4269.108 kb on - strand, within BPHYT_RS19010 at 4269.128 kb on + strand, within BPHYT_RS19010 at 4269.218 kb on + strand, within BPHYT_RS19010 at 4269.218 kb on + strand, within BPHYT_RS19010 at 4269.218 kb on + strand, within BPHYT_RS19010 at 4269.218 kb on + strand, within BPHYT_RS19010 at 4269.608 kb on + strand, within BPHYT_RS19010 at 4269.608 kb on + strand, within BPHYT_RS19010 at 4269.702 kb on - strand at 4269.812 kb on + strand at 4270.022 kb on + strand, within BPHYT_RS19015 at 4270.286 kb on + strand, within BPHYT_RS19015 at 4270.286 kb on + strand, within BPHYT_RS19015 at 4270.287 kb on - strand, within BPHYT_RS19015 at 4270.287 kb on - strand, within BPHYT_RS19015 at 4270.334 kb on + strand, within BPHYT_RS19015 at 4270.424 kb on + strand, within BPHYT_RS19015 at 4270.425 kb on - strand, within BPHYT_RS19015 at 4270.425 kb on - strand, within BPHYT_RS19015 at 4270.425 kb on - strand, within BPHYT_RS19015 at 4270.425 kb on - strand, within BPHYT_RS19015 at 4270.425 kb on - strand, within BPHYT_RS19015 at 4270.446 kb on + strand at 4270.448 kb on + strand, within BPHYT_RS19015 at 4270.448 kb on + strand, within BPHYT_RS19015 at 4270.448 kb on + strand, within BPHYT_RS19015 at 4270.448 kb on + strand, within BPHYT_RS19015 at 4270.448 kb on + strand, within BPHYT_RS19015 at 4270.449 kb on - strand, within BPHYT_RS19015 at 4270.449 kb on - strand, within BPHYT_RS19015 at 4270.449 kb on - strand, within BPHYT_RS19015 at 4270.463 kb on + strand, within BPHYT_RS19015 at 4270.547 kb on - strand, within BPHYT_RS19015 at 4270.771 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 4,267,998 + BPHYT_RS19000 0.90 +0.1 4,268,207 + +0.8 4,268,208 - -0.3 4,268,300 - +0.0 4,268,300 - -0.4 4,268,309 + -3.5 4,268,309 + +0.3 4,268,310 - +1.0 4,268,320 + +2.4 4,268,450 + BPHYT_RS19005 0.35 -1.7 4,268,451 - BPHYT_RS19005 0.35 +0.5 4,268,533 + BPHYT_RS19005 0.57 -0.1 4,268,533 + BPHYT_RS19005 0.57 -1.8 4,268,533 + BPHYT_RS19005 0.57 -0.5 4,268,534 - BPHYT_RS19005 0.57 -0.2 4,268,534 - BPHYT_RS19005 0.57 +0.2 4,268,534 - BPHYT_RS19005 0.57 -0.0 4,268,721 - +0.5 4,268,721 - +1.3 4,269,107 + BPHYT_RS19010 0.32 -0.1 4,269,108 - BPHYT_RS19010 0.32 +0.5 4,269,128 + BPHYT_RS19010 0.34 -0.5 4,269,218 + BPHYT_RS19010 0.43 +1.1 4,269,218 + BPHYT_RS19010 0.43 -1.3 4,269,218 + BPHYT_RS19010 0.43 +0.1 4,269,218 + BPHYT_RS19010 0.43 -0.5 4,269,608 + BPHYT_RS19010 0.82 -0.6 4,269,608 + BPHYT_RS19010 0.82 +0.3 4,269,702 - -0.5 4,269,812 + +0.3 4,270,022 + BPHYT_RS19015 0.25 +1.4 4,270,286 + BPHYT_RS19015 0.55 -1.0 4,270,286 + BPHYT_RS19015 0.55 +0.4 4,270,287 - BPHYT_RS19015 0.55 -0.3 4,270,287 - BPHYT_RS19015 0.55 +1.1 4,270,334 + BPHYT_RS19015 0.61 -0.3 4,270,424 + BPHYT_RS19015 0.71 +0.4 4,270,425 - BPHYT_RS19015 0.71 +0.5 4,270,425 - BPHYT_RS19015 0.71 -0.8 4,270,425 - BPHYT_RS19015 0.71 +4.5 4,270,425 - BPHYT_RS19015 0.71 +2.2 4,270,425 - BPHYT_RS19015 0.71 -1.9 4,270,446 + +2.1 4,270,448 + BPHYT_RS19015 0.74 +0.5 4,270,448 + BPHYT_RS19015 0.74 -0.4 4,270,448 + BPHYT_RS19015 0.74 -1.5 4,270,448 + BPHYT_RS19015 0.74 -0.3 4,270,448 + BPHYT_RS19015 0.74 +1.0 4,270,449 - BPHYT_RS19015 0.74 +0.1 4,270,449 - BPHYT_RS19015 0.74 +0.1 4,270,449 - BPHYT_RS19015 0.74 +0.3 4,270,463 + BPHYT_RS19015 0.76 -0.0 4,270,547 - BPHYT_RS19015 0.85 +0.1 4,270,771 + -0.7
Or see this region's nucleotide sequence