Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS10990 and BPHYT_RS10995 are separated by 161 nucleotides BPHYT_RS10995 and BPHYT_RS11000 are separated by 280 nucleotides BPHYT_RS11000 and BPHYT_RS11005 are separated by 16 nucleotides
BPHYT_RS10990: BPHYT_RS10990 - gluconate 5-dehydrogenase, at 2,498,346 to 2,499,113
_RS10990
BPHYT_RS10995: BPHYT_RS10995 - GntR family transcriptional regulator, at 2,499,275 to 2,499,994
_RS10995
BPHYT_RS11000: BPHYT_RS11000 - glutathione S-transferase, at 2,500,275 to 2,500,916
_RS11000
BPHYT_RS11005: BPHYT_RS11005 - chromate transporter, at 2,500,933 to 2,501,469
_RS11005
Position (kb) 2499
2500 Strain fitness (log2 ratio) -2
-1
0
1 at 2498.348 kb on - strand at 2498.399 kb on - strand at 2499.570 kb on + strand, within BPHYT_RS10995 at 2499.571 kb on - strand, within BPHYT_RS10995 at 2500.456 kb on + strand, within BPHYT_RS11000 at 2500.457 kb on - strand, within BPHYT_RS11000 at 2500.679 kb on - strand, within BPHYT_RS11000 at 2500.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 2,498,348 - -0.2 2,498,399 - -0.1 2,499,570 + BPHYT_RS10995 0.41 -1.0 2,499,571 - BPHYT_RS10995 0.41 -1.9 2,500,456 + BPHYT_RS11000 0.28 +0.1 2,500,457 - BPHYT_RS11000 0.28 -2.1 2,500,679 - BPHYT_RS11000 0.63 +0.3 2,500,930 + -0.3
Or see this region's nucleotide sequence