Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10505

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10500 and BPHYT_RS10505 are separated by 378 nucleotidesBPHYT_RS10505 and BPHYT_RS10510 are separated by 525 nucleotides BPHYT_RS10500: BPHYT_RS10500 - acetolactate synthase, at 2,388,587 to 2,390,389 _RS10500 BPHYT_RS10505: BPHYT_RS10505 - 2-oxoglutarate dehydrogenase E1, at 2,390,768 to 2,393,617 _RS10505 BPHYT_RS10510: BPHYT_RS10510 - AraC family transcriptional regulator, at 2,394,143 to 2,395,168 _RS10510 Position (kb) 2390 2391 2392 2393 2394Strain fitness (log2 ratio) -2 -1 0 1 2at 2390.536 kb on + strandat 2391.094 kb on - strand, within BPHYT_RS10505at 2391.883 kb on - strand, within BPHYT_RS10505at 2392.128 kb on + strand, within BPHYT_RS10505at 2392.405 kb on + strand, within BPHYT_RS10505at 2393.787 kb on - strandat 2393.946 kb on + strandat 2394.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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2,390,536 + -0.1
2,391,094 - BPHYT_RS10505 0.11 +0.9
2,391,883 - BPHYT_RS10505 0.39 +0.8
2,392,128 + BPHYT_RS10505 0.48 +1.2
2,392,405 + BPHYT_RS10505 0.57 -0.1
2,393,787 - +1.9
2,393,946 + +0.3
2,394,163 - -2.0

Or see this region's nucleotide sequence