Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08505

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08500 and BPHYT_RS08505 overlap by 4 nucleotidesBPHYT_RS08505 and BPHYT_RS08510 are separated by 1 nucleotides BPHYT_RS08500: BPHYT_RS08500 - hypothetical protein, at 1,945,440 to 1,946,522 _RS08500 BPHYT_RS08505: BPHYT_RS08505 - hypothetical protein, at 1,946,519 to 1,947,583 _RS08505 BPHYT_RS08510: BPHYT_RS08510 - acyl-CoA dehydrogenase, at 1,947,585 to 1,948,871 _RS08510 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -1 0 1at 1945.949 kb on - strand, within BPHYT_RS08500at 1946.086 kb on + strand, within BPHYT_RS08500at 1946.086 kb on + strand, within BPHYT_RS08500at 1946.087 kb on - strand, within BPHYT_RS08500at 1946.087 kb on - strand, within BPHYT_RS08500at 1946.115 kb on - strand, within BPHYT_RS08500at 1946.776 kb on - strand, within BPHYT_RS08505at 1946.776 kb on - strand, within BPHYT_RS08505at 1947.012 kb on + strand, within BPHYT_RS08505at 1947.583 kb on + strandat 1947.584 kb on - strandat 1947.788 kb on + strand, within BPHYT_RS08510at 1947.788 kb on + strand, within BPHYT_RS08510at 1948.223 kb on + strand, within BPHYT_RS08510at 1948.534 kb on + strand, within BPHYT_RS08510at 1948.534 kb on + strand, within BPHYT_RS08510at 1948.534 kb on + strand, within BPHYT_RS08510at 1948.535 kb on - strand, within BPHYT_RS08510

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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1,945,949 - BPHYT_RS08500 0.47 +0.2
1,946,086 + BPHYT_RS08500 0.60 +0.0
1,946,086 + BPHYT_RS08500 0.60 +0.2
1,946,087 - BPHYT_RS08500 0.60 -1.0
1,946,087 - BPHYT_RS08500 0.60 -1.2
1,946,115 - BPHYT_RS08500 0.62 -0.0
1,946,776 - BPHYT_RS08505 0.24 +1.4
1,946,776 - BPHYT_RS08505 0.24 +1.6
1,947,012 + BPHYT_RS08505 0.46 +0.4
1,947,583 + -1.7
1,947,584 - +0.6
1,947,788 + BPHYT_RS08510 0.16 +0.4
1,947,788 + BPHYT_RS08510 0.16 -0.7
1,948,223 + BPHYT_RS08510 0.50 -0.8
1,948,534 + BPHYT_RS08510 0.74 -0.3
1,948,534 + BPHYT_RS08510 0.74 +0.4
1,948,534 + BPHYT_RS08510 0.74 -0.7
1,948,535 - BPHYT_RS08510 0.74 +0.6

Or see this region's nucleotide sequence