Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06530 and BPHYT_RS06535 are separated by 16 nucleotides BPHYT_RS06535 and BPHYT_RS06540 overlap by 4 nucleotides BPHYT_RS06540 and BPHYT_RS06545 are separated by 361 nucleotides
BPHYT_RS06530: BPHYT_RS06530 - membrane protein, at 1,483,282 to 1,484,040
_RS06530
BPHYT_RS06535: BPHYT_RS06535 - membrane protein, at 1,484,057 to 1,484,485
_RS06535
BPHYT_RS06540: BPHYT_RS06540 - RNA polymerase sigma70 factor, at 1,484,482 to 1,485,045
_RS06540
BPHYT_RS06545: BPHYT_RS06545 - acetolactate synthase, at 1,485,407 to 1,487,170
_RS06545
Position (kb) 1484
1485
1486 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1483.575 kb on - strand, within BPHYT_RS06530 at 1483.629 kb on - strand, within BPHYT_RS06530 at 1483.967 kb on + strand at 1484.034 kb on - strand at 1484.077 kb on - strand at 1484.101 kb on - strand, within BPHYT_RS06535 at 1484.126 kb on + strand, within BPHYT_RS06535 at 1484.127 kb on - strand, within BPHYT_RS06535 at 1484.127 kb on - strand, within BPHYT_RS06535 at 1484.181 kb on + strand, within BPHYT_RS06535 at 1484.181 kb on + strand, within BPHYT_RS06535 at 1484.485 kb on + strand at 1484.485 kb on + strand at 1484.486 kb on - strand at 1484.601 kb on + strand, within BPHYT_RS06540 at 1484.602 kb on - strand, within BPHYT_RS06540 at 1484.602 kb on - strand, within BPHYT_RS06540 at 1484.811 kb on + strand, within BPHYT_RS06540 at 1484.811 kb on + strand, within BPHYT_RS06540 at 1484.811 kb on + strand, within BPHYT_RS06540 at 1484.811 kb on + strand, within BPHYT_RS06540 at 1484.838 kb on - strand, within BPHYT_RS06540 at 1484.862 kb on + strand, within BPHYT_RS06540 at 1484.862 kb on + strand, within BPHYT_RS06540 at 1484.863 kb on - strand, within BPHYT_RS06540 at 1484.863 kb on - strand, within BPHYT_RS06540 at 1484.975 kb on + strand, within BPHYT_RS06540 at 1485.077 kb on + strand at 1485.113 kb on + strand at 1485.162 kb on + strand at 1485.163 kb on - strand at 1485.163 kb on - strand at 1485.224 kb on - strand at 1485.224 kb on - strand at 1485.253 kb on + strand at 1485.274 kb on + strand at 1485.274 kb on + strand at 1485.275 kb on - strand at 1485.275 kb on - strand at 1485.412 kb on + strand at 1485.551 kb on + strand at 1485.569 kb on + strand at 1485.725 kb on + strand, within BPHYT_RS06545 at 1485.725 kb on + strand, within BPHYT_RS06545 at 1485.725 kb on + strand, within BPHYT_RS06545 at 1485.971 kb on + strand, within BPHYT_RS06545 at 1486.004 kb on + strand, within BPHYT_RS06545 at 1486.004 kb on + strand, within BPHYT_RS06545
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 1,483,575 - BPHYT_RS06530 0.39 -4.3 1,483,629 - BPHYT_RS06530 0.46 +1.1 1,483,967 + -1.8 1,484,034 - -1.3 1,484,077 - -0.6 1,484,101 - BPHYT_RS06535 0.10 +0.1 1,484,126 + BPHYT_RS06535 0.16 +0.0 1,484,127 - BPHYT_RS06535 0.16 -0.1 1,484,127 - BPHYT_RS06535 0.16 -0.9 1,484,181 + BPHYT_RS06535 0.29 +0.3 1,484,181 + BPHYT_RS06535 0.29 -1.5 1,484,485 + -0.3 1,484,485 + +0.2 1,484,486 - -0.2 1,484,601 + BPHYT_RS06540 0.21 -2.0 1,484,602 - BPHYT_RS06540 0.21 -1.0 1,484,602 - BPHYT_RS06540 0.21 -2.8 1,484,811 + BPHYT_RS06540 0.58 -0.7 1,484,811 + BPHYT_RS06540 0.58 -2.1 1,484,811 + BPHYT_RS06540 0.58 -1.1 1,484,811 + BPHYT_RS06540 0.58 -0.2 1,484,838 - BPHYT_RS06540 0.63 -2.0 1,484,862 + BPHYT_RS06540 0.67 +0.1 1,484,862 + BPHYT_RS06540 0.67 -0.2 1,484,863 - BPHYT_RS06540 0.68 -1.2 1,484,863 - BPHYT_RS06540 0.68 -1.8 1,484,975 + BPHYT_RS06540 0.87 -1.6 1,485,077 + -1.6 1,485,113 + -0.9 1,485,162 + +0.9 1,485,163 - +0.3 1,485,163 - -0.6 1,485,224 - +0.5 1,485,224 - +1.2 1,485,253 + +0.4 1,485,274 + +0.1 1,485,274 + +0.8 1,485,275 - -4.0 1,485,275 - -2.2 1,485,412 + -4.6 1,485,551 + -2.1 1,485,569 + -1.6 1,485,725 + BPHYT_RS06545 0.18 -0.6 1,485,725 + BPHYT_RS06545 0.18 -0.9 1,485,725 + BPHYT_RS06545 0.18 -2.8 1,485,971 + BPHYT_RS06545 0.32 -3.0 1,486,004 + BPHYT_RS06545 0.34 -4.1 1,486,004 + BPHYT_RS06545 0.34 -6.3
Or see this region's nucleotide sequence