Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02065 and BPHYT_RS02070 are separated by 562 nucleotides BPHYT_RS02070 and BPHYT_RS02075 are separated by 700 nucleotides
BPHYT_RS02065: BPHYT_RS02065 - membrane protein, at 472,648 to 473,676
_RS02065
BPHYT_RS02070: BPHYT_RS02070 - hypothetical protein, at 474,239 to 474,784
_RS02070
BPHYT_RS02075: BPHYT_RS02075 - porin, at 475,485 to 476,570
_RS02075
Position (kb) 474
475 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 473.284 kb on + strand, within BPHYT_RS02065 at 473.285 kb on - strand, within BPHYT_RS02065 at 473.344 kb on - strand, within BPHYT_RS02065 at 473.379 kb on - strand, within BPHYT_RS02065 at 473.416 kb on - strand, within BPHYT_RS02065 at 473.837 kb on + strand at 473.838 kb on - strand at 473.838 kb on - strand at 473.838 kb on - strand at 473.843 kb on + strand at 473.844 kb on - strand at 473.844 kb on - strand at 473.844 kb on - strand at 473.946 kb on - strand at 474.039 kb on + strand at 474.040 kb on - strand at 474.107 kb on - strand at 474.107 kb on - strand at 474.442 kb on + strand, within BPHYT_RS02070 at 474.699 kb on - strand, within BPHYT_RS02070 at 475.291 kb on + strand at 475.316 kb on - strand at 475.316 kb on - strand at 475.330 kb on - strand at 475.360 kb on + strand at 475.593 kb on + strand at 475.593 kb on + strand at 475.594 kb on - strand, within BPHYT_RS02075 at 475.773 kb on + strand, within BPHYT_RS02075 at 475.773 kb on + strand, within BPHYT_RS02075
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 473,284 + BPHYT_RS02065 0.62 -0.5 473,285 - BPHYT_RS02065 0.62 +0.7 473,344 - BPHYT_RS02065 0.68 +0.2 473,379 - BPHYT_RS02065 0.71 -1.6 473,416 - BPHYT_RS02065 0.75 +1.1 473,837 + +0.7 473,838 - -0.2 473,838 - -2.7 473,838 - +0.4 473,843 + -1.5 473,844 - -0.5 473,844 - +0.2 473,844 - -0.1 473,946 - +0.8 474,039 + -2.1 474,040 - -0.3 474,107 - -1.1 474,107 - +1.0 474,442 + BPHYT_RS02070 0.37 +3.0 474,699 - BPHYT_RS02070 0.84 -0.4 475,291 + +0.2 475,316 - +0.0 475,316 - -0.8 475,330 - +0.4 475,360 + +0.4 475,593 + +0.2 475,593 + -2.3 475,594 - BPHYT_RS02075 0.10 -0.6 475,773 + BPHYT_RS02075 0.27 -0.9 475,773 + BPHYT_RS02075 0.27 -0.5
Or see this region's nucleotide sequence