Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01165 and BPHYT_RS01170 are separated by 772 nucleotides BPHYT_RS01170 and BPHYT_RS01180 are separated by 426 nucleotides
BPHYT_RS01165: BPHYT_RS01165 - hypothetical protein, at 269,301 to 269,642
_RS01165
BPHYT_RS01170: BPHYT_RS01170 - hypothetical protein, at 270,415 to 270,657
_RS01170
BPHYT_RS01180: BPHYT_RS01180 - AraC family transcriptional regulator, at 271,084 to 271,878
_RS01180
Position (kb) 270
271 Strain fitness (log2 ratio) -2
-1
0
1 at 269.503 kb on + strand, within BPHYT_RS01165 at 269.504 kb on - strand, within BPHYT_RS01165 at 269.712 kb on - strand at 270.151 kb on + strand at 270.151 kb on + strand at 270.152 kb on - strand at 270.223 kb on - strand at 270.223 kb on - strand at 270.368 kb on + strand at 270.368 kb on + strand at 270.368 kb on + strand at 270.541 kb on + strand, within BPHYT_RS01170 at 270.542 kb on - strand, within BPHYT_RS01170 at 270.544 kb on - strand, within BPHYT_RS01170 at 270.544 kb on - strand, within BPHYT_RS01170 at 270.835 kb on + strand at 270.836 kb on - strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.923 kb on - strand at 270.923 kb on - strand at 270.924 kb on + strand at 270.924 kb on + strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 271.001 kb on - strand at 271.059 kb on - strand at 271.607 kb on + strand, within BPHYT_RS01180 at 271.607 kb on + strand, within BPHYT_RS01180
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 269,503 + BPHYT_RS01165 0.59 +1.0 269,504 - BPHYT_RS01165 0.59 -0.1 269,712 - -0.5 270,151 + -1.0 270,151 + -0.2 270,152 - +0.1 270,223 - +0.1 270,223 - +0.8 270,368 + -0.4 270,368 + -0.0 270,368 + -2.6 270,541 + BPHYT_RS01170 0.52 -0.8 270,542 - BPHYT_RS01170 0.52 -0.1 270,544 - BPHYT_RS01170 0.53 -1.4 270,544 - BPHYT_RS01170 0.53 -1.4 270,835 + +0.2 270,836 - +0.2 270,922 + +0.4 270,922 + +0.2 270,922 + +0.1 270,922 + +1.4 270,922 + -1.0 270,922 + +1.5 270,922 + -0.5 270,923 - +0.3 270,923 - -0.9 270,924 + -1.0 270,924 + -0.1 270,925 - +0.2 270,925 - +0.5 270,925 - +0.2 270,925 - +1.5 270,925 - +0.0 271,001 - -0.3 271,059 - +0.4 271,607 + BPHYT_RS01180 0.66 +1.0 271,607 + BPHYT_RS01180 0.66 -0.6
Or see this region's nucleotide sequence