Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20005

Experiment: butyrate 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate 20 mM (C)
4,525,678	+		PFLU_RS19995	0.55	-1.2
4,525,678	+		PFLU_RS19995	0.55	+0.6
4,525,678	+		PFLU_RS19995	0.55	-1.3
4,525,735	+		PFLU_RS19995	0.61	+1.0
4,525,735	+		PFLU_RS19995	0.61	-1.3
4,525,736	-		PFLU_RS19995	0.61	-0.2
4,525,736	-		PFLU_RS19995	0.61	-1.2
4,525,736	-		PFLU_RS19995	0.61	+0.2
4,526,108	+				-0.5
4,526,150	+				+0.0
4,526,150	+				+0.5
4,526,150	+				+0.4
4,526,150	+				+0.8
4,526,150	+				+0.4
4,526,150	+				+0.2
4,526,150	+				-0.8
4,526,151	-				+0.9
4,526,151	-				+0.1
4,526,151	-				+0.8
4,526,151	-				+0.7
4,526,157	+				+0.4
4,526,192	-				-1.1
4,526,634	+				-0.2
4,526,634	+				-0.3
4,526,634	+				+0.5
4,526,634	+				-0.1
4,526,635	-				-1.8
4,526,635	-				+0.2
4,526,635	-				+0.4
4,526,635	-				+0.5
4,526,635	-				+0.5
4,526,662	-				-1.0
4,526,662	-				-0.8
4,526,665	+				+1.4
4,526,808	-				+0.4
4,526,859	+				-1.2
4,526,860	-				+1.1
4,526,915	+		PFLU_RS20005	0.12	-2.0
4,526,916	-		PFLU_RS20005	0.12	+2.2
4,526,946	+		PFLU_RS20005	0.13	+0.1
4,526,946	+		PFLU_RS20005	0.13	-1.2
4,526,947	-		PFLU_RS20005	0.13	-0.0
4,526,947	-		PFLU_RS20005	0.13	+0.5
4,526,947	-		PFLU_RS20005	0.13	+1.9
4,526,979	+		PFLU_RS20005	0.14	-0.6
4,526,979	+		PFLU_RS20005	0.14	+2.0
4,526,979	+		PFLU_RS20005	0.14	-1.5
4,526,979	+		PFLU_RS20005	0.14	+0.1
4,526,979	+		PFLU_RS20005	0.14	-0.2
4,526,979	+		PFLU_RS20005	0.14	+0.7
4,526,979	+		PFLU_RS20005	0.14	+0.8
4,526,980	-		PFLU_RS20005	0.14	-0.0
4,526,980	-		PFLU_RS20005	0.14	-0.5
4,526,980	-		PFLU_RS20005	0.14	-0.6
4,527,018	+		PFLU_RS20005	0.16	-0.0
4,527,018	+		PFLU_RS20005	0.16	+1.0
4,527,018	+		PFLU_RS20005	0.16	-1.8
4,527,018	+		PFLU_RS20005	0.16	+0.8
4,527,018	+		PFLU_RS20005	0.16	+0.7
4,527,019	-		PFLU_RS20005	0.16	+0.1
4,527,019	-		PFLU_RS20005	0.16	+1.8
4,527,019	-		PFLU_RS20005	0.16	+0.5
4,527,019	-		PFLU_RS20005	0.16	-1.2
4,527,128	-		PFLU_RS20005	0.21	+0.1
4,527,139	-		PFLU_RS20005	0.21	-0.4
4,527,195	+		PFLU_RS20005	0.23	+0.5
4,527,195	+		PFLU_RS20005	0.23	+1.1
4,527,195	+		PFLU_RS20005	0.23	+0.1
4,527,226	+		PFLU_RS20005	0.25	-0.5
4,527,226	+		PFLU_RS20005	0.25	-0.3
4,527,226	+		PFLU_RS20005	0.25	+0.2
4,527,254	-		PFLU_RS20005	0.26	-2.2
4,527,300	+		PFLU_RS20005	0.28	-1.0
4,527,300	+		PFLU_RS20005	0.28	+0.2
4,527,300	+		PFLU_RS20005	0.28	+0.1
4,527,300	+		PFLU_RS20005	0.28	+0.1
4,527,300	+		PFLU_RS20005	0.28	+1.8
4,527,300	+		PFLU_RS20005	0.28	+0.0
4,527,300	+		PFLU_RS20005	0.28	+0.4
4,527,301	-		PFLU_RS20005	0.28	+0.7
4,527,301	-		PFLU_RS20005	0.28	-0.6
4,527,301	-		PFLU_RS20005	0.28	-0.1
4,527,301	-		PFLU_RS20005	0.28	-1.3
4,527,301	-		PFLU_RS20005	0.28	-0.0
4,527,301	-		PFLU_RS20005	0.28	-0.9
4,527,301	-		PFLU_RS20005	0.28	+0.1
4,527,309	+		PFLU_RS20005	0.28	+1.1
4,527,309	+		PFLU_RS20005	0.28	+1.2
4,527,309	+		PFLU_RS20005	0.28	+0.8
4,527,309	+		PFLU_RS20005	0.28	+0.5
4,527,309	+		PFLU_RS20005	0.28	+0.8
4,527,310	-		PFLU_RS20005	0.28	+0.2
4,527,310	-		PFLU_RS20005	0.28	-1.9
4,527,310	-		PFLU_RS20005	0.28	-0.2
4,527,310	-		PFLU_RS20005	0.28	-0.9
4,527,375	+		PFLU_RS20005	0.31	-1.3
4,527,516	+		PFLU_RS20005	0.37	+1.2
4,527,516	+		PFLU_RS20005	0.37	-1.2
4,527,516	+		PFLU_RS20005	0.37	+0.8
4,527,517	-		PFLU_RS20005	0.37	-0.2
4,527,573	+		PFLU_RS20005	0.39	+0.6
4,527,573	+		PFLU_RS20005	0.39	+0.2
4,527,574	-		PFLU_RS20005	0.39	+0.2
4,527,627	+		PFLU_RS20005	0.41	+1.0
4,527,627	+		PFLU_RS20005	0.41	+0.4
4,527,627	+		PFLU_RS20005	0.41	+0.1
4,527,627	+		PFLU_RS20005	0.41	+0.7
4,527,627	+		PFLU_RS20005	0.41	+0.7
4,527,627	+		PFLU_RS20005	0.41	+3.4
4,527,627	+		PFLU_RS20005	0.41	-2.0
4,527,627	+		PFLU_RS20005	0.41	-0.7
4,527,627	+		PFLU_RS20005	0.41	+1.2
4,527,628	-		PFLU_RS20005	0.41	+1.3
4,527,628	-		PFLU_RS20005	0.41	+0.7
4,527,628	-		PFLU_RS20005	0.41	-0.2
4,527,628	-		PFLU_RS20005	0.41	+0.8
4,527,628	-		PFLU_RS20005	0.41	-1.1
4,527,628	-		PFLU_RS20005	0.41	-0.2
4,527,633	+		PFLU_RS20005	0.42	+1.4
4,527,633	+		PFLU_RS20005	0.42	+0.4
4,527,633	+		PFLU_RS20005	0.42	+0.3
4,527,633	+		PFLU_RS20005	0.42	+0.2
4,527,634	-		PFLU_RS20005	0.42	-1.3
4,527,634	-		PFLU_RS20005	0.42	+1.2
4,527,634	-		PFLU_RS20005	0.42	+0.1
4,527,702	+		PFLU_RS20005	0.44	+0.2
4,527,703	-		PFLU_RS20005	0.44	+1.7
4,527,828	+		PFLU_RS20005	0.50	-1.5
4,527,829	-		PFLU_RS20005	0.50	+0.6
4,527,915	+		PFLU_RS20005	0.53	-0.9
4,527,915	+		PFLU_RS20005	0.53	-1.3
4,527,916	-		PFLU_RS20005	0.53	-1.2
4,527,916	-		PFLU_RS20005	0.53	+1.0
4,528,058	+		PFLU_RS20005	0.59	-0.3
4,528,166	+		PFLU_RS20005	0.64	+0.4
4,528,166	+		PFLU_RS20005	0.64	+1.2
4,528,167	-		PFLU_RS20005	0.64	-0.3
4,528,169	-		PFLU_RS20005	0.64	-0.5
4,528,359	+		PFLU_RS20005	0.72	+0.2
4,528,359	+		PFLU_RS20005	0.72	-0.4
4,528,360	-		PFLU_RS20005	0.72	-0.5
4,528,360	-		PFLU_RS20005	0.72	-2.0
4,528,378	-		PFLU_RS20005	0.73	+2.2
4,528,389	+		PFLU_RS20005	0.73	-0.2
4,528,389	+		PFLU_RS20005	0.73	-0.8
4,528,390	-		PFLU_RS20005	0.73	-0.3
4,528,390	-		PFLU_RS20005	0.73	-2.2
4,528,390	-		PFLU_RS20005	0.73	+0.7
4,528,390	-		PFLU_RS20005	0.73	-0.9
4,528,390	-		PFLU_RS20005	0.73	-1.2
4,528,441	-		PFLU_RS20005	0.75	-1.0
4,528,441	-		PFLU_RS20005	0.75	+0.8
4,528,539	+		PFLU_RS20005	0.79	+0.8
4,528,539	+		PFLU_RS20005	0.79	+1.3
4,528,539	+		PFLU_RS20005	0.79	-0.5
4,528,540	-		PFLU_RS20005	0.79	-1.2
4,528,540	-		PFLU_RS20005	0.79	+0.9
4,528,540	-		PFLU_RS20005	0.79	-0.1
4,528,540	-		PFLU_RS20005	0.79	+0.1
4,528,626	+		PFLU_RS20005	0.83	+1.7
4,528,626	+		PFLU_RS20005	0.83	+0.2
4,528,626	+		PFLU_RS20005	0.83	-0.3
4,528,627	-		PFLU_RS20005	0.83	+0.0
4,528,627	-		PFLU_RS20005	0.83	-0.7
4,528,627	-		PFLU_RS20005	0.83	+0.9
4,528,627	-		PFLU_RS20005	0.83	+1.2
4,528,627	-		PFLU_RS20005	0.83	+0.6
4,528,627	-		PFLU_RS20005	0.83	-0.8
4,528,627	-		PFLU_RS20005	0.83	+1.0
4,528,642	-		PFLU_RS20005	0.83	+0.7
4,528,716	+		PFLU_RS20005	0.87	-1.9
4,528,716	+		PFLU_RS20005	0.87	+0.0
4,528,716	+		PFLU_RS20005	0.87	-0.4
4,528,716	+		PFLU_RS20005	0.87	+0.1
4,528,716	+		PFLU_RS20005	0.87	-1.2
4,528,716	+		PFLU_RS20005	0.87	+0.3
4,528,716	+		PFLU_RS20005	0.87	+2.2
4,528,716	+		PFLU_RS20005	0.87	+0.9
4,528,716	+		PFLU_RS20005	0.87	-0.6
4,528,716	+		PFLU_RS20005	0.87	-1.9
4,528,717	-		PFLU_RS20005	0.87	+0.5
4,528,717	-		PFLU_RS20005	0.87	-0.8
4,528,717	-		PFLU_RS20005	0.87	-0.9
4,528,717	-		PFLU_RS20005	0.87	+2.8
4,528,717	-		PFLU_RS20005	0.87	-2.4
4,528,717	-		PFLU_RS20005	0.87	-0.2
4,528,717	-		PFLU_RS20005	0.87	+2.1
4,528,717	-		PFLU_RS20005	0.87	+0.5
4,528,717	-		PFLU_RS20005	0.87	-0.9
4,528,717	-		PFLU_RS20005	0.87	+0.8
4,528,717	-		PFLU_RS20005	0.87	-0.2
4,528,717	-		PFLU_RS20005	0.87	+1.2
4,528,717	-		PFLU_RS20005	0.87	-0.5
4,528,717	-		PFLU_RS20005	0.87	-0.4
4,528,717	-		PFLU_RS20005	0.87	-0.2
4,528,915	-				+0.2
4,528,944	+				+0.2
4,528,944	+				-2.2
4,528,945	-				-0.4
4,529,067	-				+0.6
4,529,240	-		PFLU_RS20010	0.23	-1.8
4,529,296	+		PFLU_RS20010	0.34	+0.6
4,529,296	+		PFLU_RS20010	0.34	+1.4
4,529,296	+		PFLU_RS20010	0.34	+0.5
4,529,296	+		PFLU_RS20010	0.34	-0.0
4,529,296	+		PFLU_RS20010	0.34	+0.8
4,529,296	+		PFLU_RS20010	0.34	-0.3
4,529,296	+		PFLU_RS20010	0.34	+2.1
4,529,296	+		PFLU_RS20010	0.34	-0.8
4,529,296	+		PFLU_RS20010	0.34	-0.5
4,529,296	+		PFLU_RS20010	0.34	-1.3
4,529,296	+		PFLU_RS20010	0.34	+1.2
4,529,296	+		PFLU_RS20010	0.34	+0.1
4,529,297	-		PFLU_RS20010	0.35	+0.8
4,529,297	-		PFLU_RS20010	0.35	-1.2
4,529,297	-		PFLU_RS20010	0.35	-3.4
4,529,297	-		PFLU_RS20010	0.35	-0.8
4,529,297	-		PFLU_RS20010	0.35	+0.4
4,529,297	-		PFLU_RS20010	0.35	+1.4
4,529,297	-		PFLU_RS20010	0.35	-0.9
4,529,297	-		PFLU_RS20010	0.35	+1.1
4,529,297	-		PFLU_RS20010	0.35	-0.2
4,529,299	+		PFLU_RS20010	0.35	-0.2
4,529,299	+		PFLU_RS20010	0.35	+1.8
4,529,299	+		PFLU_RS20010	0.35	-0.6
4,529,299	+		PFLU_RS20010	0.35	+0.1
4,529,299	+		PFLU_RS20010	0.35	-0.4
4,529,299	+		PFLU_RS20010	0.35	-1.2
4,529,300	-		PFLU_RS20010	0.35	+1.1
4,529,300	-		PFLU_RS20010	0.35	+0.8
4,529,300	-		PFLU_RS20010	0.35	+1.0
4,529,300	-		PFLU_RS20010	0.35	-0.8
4,529,693	+				+1.0
4,529,694	-				+0.6
4,529,694	-				+1.4
4,529,694	-				-1.2
4,529,694	-				-1.2
4,529,696	+				+2.3
4,529,847	-				-1.2
4,529,847	-				+0.8
4,530,002	+		PFLU_RS20015	0.19	+2.8