Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27145

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27140 and BPHYT_RS27145 are separated by 30 nucleotidesBPHYT_RS27145 and BPHYT_RS27150 are separated by 189 nucleotides BPHYT_RS27140: BPHYT_RS27140 - MFS transporter, at 1,667,068 to 1,668,654 _RS27140 BPHYT_RS27145: BPHYT_RS27145 - TetR family transcriptional regulator, at 1,668,685 to 1,669,323 _RS27145 BPHYT_RS27150: BPHYT_RS27150 - patatin, at 1,669,513 to 1,670,625 _RS27150 Position (kb) 1668 1669 1670Strain fitness (log2 ratio) -1 0 1 2at 1667.837 kb on + strand, within BPHYT_RS27140at 1668.009 kb on - strand, within BPHYT_RS27140at 1668.009 kb on - strand, within BPHYT_RS27140at 1668.315 kb on - strand, within BPHYT_RS27140at 1669.134 kb on - strand, within BPHYT_RS27145at 1669.211 kb on - strand, within BPHYT_RS27145at 1669.232 kb on - strand, within BPHYT_RS27145at 1669.332 kb on + strandat 1669.431 kb on - strandat 1669.882 kb on + strand, within BPHYT_RS27150at 1669.883 kb on - strand, within BPHYT_RS27150at 1669.883 kb on - strand, within BPHYT_RS27150at 1669.984 kb on + strand, within BPHYT_RS27150at 1670.116 kb on + strand, within BPHYT_RS27150at 1670.132 kb on - strand, within BPHYT_RS27150at 1670.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,667,837 + BPHYT_RS27140 0.48 -0.0
1,668,009 - BPHYT_RS27140 0.59 -0.4
1,668,009 - BPHYT_RS27140 0.59 -0.4
1,668,315 - BPHYT_RS27140 0.79 +0.1
1,669,134 - BPHYT_RS27145 0.70 -0.3
1,669,211 - BPHYT_RS27145 0.82 -0.9
1,669,232 - BPHYT_RS27145 0.86 -1.2
1,669,332 + -0.4
1,669,431 - +2.2
1,669,882 + BPHYT_RS27150 0.33 +0.0
1,669,883 - BPHYT_RS27150 0.33 -0.2
1,669,883 - BPHYT_RS27150 0.33 +0.0
1,669,984 + BPHYT_RS27150 0.42 +0.5
1,670,116 + BPHYT_RS27150 0.54 +0.2
1,670,132 - BPHYT_RS27150 0.56 +0.7
1,670,206 + -1.7

Or see this region's nucleotide sequence