Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00535 and BPHYT_RS00540 are separated by 389 nucleotides BPHYT_RS00540 and BPHYT_RS00545 are separated by 434 nucleotides
BPHYT_RS00535: BPHYT_RS00535 - AraC family transcriptional regulator, at 129,281 to 130,255
_RS00535
BPHYT_RS00540: BPHYT_RS00540 - hypothetical protein, at 130,645 to 131,079
_RS00540
BPHYT_RS00545: BPHYT_RS00545 - LysR family transcriptional regulator, at 131,514 to 132,455
_RS00545
Position (kb) 130
131
132 Strain fitness (log2 ratio) -1
0
1 at 129.751 kb on + strand, within BPHYT_RS00535 at 129.752 kb on - strand, within BPHYT_RS00535 at 129.771 kb on - strand, within BPHYT_RS00535 at 129.771 kb on - strand, within BPHYT_RS00535 at 129.899 kb on + strand, within BPHYT_RS00535 at 129.900 kb on - strand, within BPHYT_RS00535 at 130.111 kb on + strand, within BPHYT_RS00535 at 130.111 kb on + strand, within BPHYT_RS00535 at 130.135 kb on + strand, within BPHYT_RS00535 at 130.136 kb on - strand, within BPHYT_RS00535 at 130.188 kb on + strand at 130.189 kb on - strand at 130.311 kb on - strand at 130.432 kb on - strand at 130.514 kb on + strand at 130.515 kb on - strand at 130.515 kb on - strand at 130.586 kb on - strand at 130.916 kb on - strand, within BPHYT_RS00540 at 130.951 kb on + strand, within BPHYT_RS00540 at 130.969 kb on + strand, within BPHYT_RS00540 at 130.979 kb on - strand, within BPHYT_RS00540 at 131.152 kb on + strand at 131.280 kb on + strand at 131.280 kb on + strand at 131.281 kb on - strand at 131.282 kb on + strand at 131.283 kb on - strand at 131.330 kb on + strand at 131.374 kb on - strand at 131.376 kb on - strand at 131.451 kb on - strand at 131.511 kb on + strand at 131.511 kb on + strand at 131.512 kb on - strand at 131.521 kb on + strand at 131.535 kb on + strand at 131.571 kb on - strand at 131.696 kb on + strand, within BPHYT_RS00545 at 131.696 kb on + strand, within BPHYT_RS00545 at 131.697 kb on - strand, within BPHYT_RS00545 at 131.697 kb on - strand, within BPHYT_RS00545 at 131.697 kb on - strand, within BPHYT_RS00545 at 131.777 kb on + strand, within BPHYT_RS00545 at 131.804 kb on - strand, within BPHYT_RS00545 at 131.804 kb on - strand, within BPHYT_RS00545 at 131.880 kb on - strand, within BPHYT_RS00545 at 131.949 kb on + strand, within BPHYT_RS00545 at 132.047 kb on + strand, within BPHYT_RS00545 at 132.047 kb on + strand, within BPHYT_RS00545
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 129,751 + BPHYT_RS00535 0.48 +1.1 129,752 - BPHYT_RS00535 0.48 -0.3 129,771 - BPHYT_RS00535 0.50 +0.4 129,771 - BPHYT_RS00535 0.50 -0.1 129,899 + BPHYT_RS00535 0.63 -0.9 129,900 - BPHYT_RS00535 0.63 +0.0 130,111 + BPHYT_RS00535 0.85 +1.1 130,111 + BPHYT_RS00535 0.85 -0.8 130,135 + BPHYT_RS00535 0.88 +0.1 130,136 - BPHYT_RS00535 0.88 -0.0 130,188 + +0.5 130,189 - +1.0 130,311 - -0.6 130,432 - +0.0 130,514 + -0.2 130,515 - -0.2 130,515 - -0.0 130,586 - -0.1 130,916 - BPHYT_RS00540 0.62 -1.6 130,951 + BPHYT_RS00540 0.70 +0.6 130,969 + BPHYT_RS00540 0.74 -0.4 130,979 - BPHYT_RS00540 0.77 -1.0 131,152 + +0.2 131,280 + -0.2 131,280 + +1.0 131,281 - +0.5 131,282 + +0.2 131,283 - +0.2 131,330 + +0.3 131,374 - -0.4 131,376 - +0.3 131,451 - -0.2 131,511 + +0.3 131,511 + -0.2 131,512 - -0.4 131,521 + +0.0 131,535 + +0.3 131,571 - -0.4 131,696 + BPHYT_RS00545 0.19 -0.4 131,696 + BPHYT_RS00545 0.19 -0.4 131,697 - BPHYT_RS00545 0.19 +0.2 131,697 - BPHYT_RS00545 0.19 -0.7 131,697 - BPHYT_RS00545 0.19 +0.1 131,777 + BPHYT_RS00545 0.28 -0.3 131,804 - BPHYT_RS00545 0.31 +0.2 131,804 - BPHYT_RS00545 0.31 +0.6 131,880 - BPHYT_RS00545 0.39 -1.1 131,949 + BPHYT_RS00545 0.46 -0.0 132,047 + BPHYT_RS00545 0.57 +0.3 132,047 + BPHYT_RS00545 0.57 +0.9
Or see this region's nucleotide sequence