Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08855

Experiment: Xanthosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08850 and PFLU_RS08855 overlap by 11 nucleotidesPFLU_RS08855 and PFLU_RS08860 are separated by 58 nucleotides PFLU_RS08850: PFLU_RS08850 - pyruvate kinase, at 1,961,470 to 1,962,885 _RS08850 PFLU_RS08855: PFLU_RS08855 - glycerate kinase, at 1,962,875 to 1,964,155 _RS08855 PFLU_RS08860: PFLU_RS08860 - 2-hydroxy-3-oxopropionate reductase, at 1,964,214 to 1,965,104 _RS08860 Position (kb) 1962 1963 1964 1965Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1962.010 kb on - strand, within PFLU_RS08850at 1962.498 kb on + strand, within PFLU_RS08850at 1962.498 kb on + strand, within PFLU_RS08850at 1962.498 kb on + strand, within PFLU_RS08850at 1962.498 kb on + strand, within PFLU_RS08850at 1962.499 kb on - strand, within PFLU_RS08850at 1962.499 kb on - strand, within PFLU_RS08850at 1962.499 kb on - strand, within PFLU_RS08850at 1962.622 kb on + strand, within PFLU_RS08850at 1962.623 kb on - strand, within PFLU_RS08850at 1962.738 kb on - strand, within PFLU_RS08850at 1962.789 kb on + strandat 1962.789 kb on + strandat 1962.790 kb on - strandat 1962.790 kb on - strandat 1962.978 kb on + strandat 1962.978 kb on + strandat 1962.978 kb on + strandat 1962.979 kb on - strandat 1962.984 kb on + strandat 1963.044 kb on + strand, within PFLU_RS08855at 1963.060 kb on + strand, within PFLU_RS08855at 1963.060 kb on + strand, within PFLU_RS08855at 1963.119 kb on + strand, within PFLU_RS08855at 1963.120 kb on - strand, within PFLU_RS08855at 1963.120 kb on - strand, within PFLU_RS08855at 1963.509 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.614 kb on + strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.615 kb on - strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.620 kb on + strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1963.621 kb on - strand, within PFLU_RS08855at 1964.070 kb on + strandat 1964.071 kb on - strandat 1964.155 kb on + strandat 1964.156 kb on - strandat 1964.156 kb on - strandat 1964.156 kb on - strandat 1964.181 kb on + strandat 1964.182 kb on - strandat 1964.182 kb on - strandat 1964.184 kb on + strandat 1964.184 kb on + strandat 1964.184 kb on + strandat 1964.185 kb on - strandat 1964.185 kb on - strandat 1964.185 kb on - strandat 1964.185 kb on - strandat 1964.185 kb on - strandat 1964.185 kb on - strandat 1964.215 kb on + strandat 1964.215 kb on + strandat 1964.215 kb on + strandat 1964.215 kb on + strandat 1964.215 kb on + strandat 1964.216 kb on - strandat 1964.216 kb on - strandat 1964.216 kb on - strandat 1964.216 kb on - strandat 1964.219 kb on + strandat 1964.220 kb on - strandat 1964.220 kb on - strandat 1964.243 kb on + strandat 1964.243 kb on + strandat 1964.243 kb on + strandat 1964.243 kb on + strandat 1964.244 kb on - strandat 1964.244 kb on - strandat 1964.405 kb on + strand, within PFLU_RS08860at 1964.406 kb on - strand, within PFLU_RS08860at 1964.758 kb on + strand, within PFLU_RS08860at 1964.758 kb on + strand, within PFLU_RS08860at 1964.758 kb on + strand, within PFLU_RS08860at 1965.002 kb on + strand, within PFLU_RS08860at 1965.099 kb on - strandat 1965.122 kb on + strandat 1965.122 kb on + strandat 1965.122 kb on + strandat 1965.123 kb on - strandat 1965.123 kb on - strandat 1965.123 kb on - strandat 1965.123 kb on - strandat 1965.123 kb on - strandat 1965.123 kb on - strandat 1965.123 kb on - strandat 1965.125 kb on + strandat 1965.125 kb on + strandat 1965.125 kb on + strandat 1965.125 kb on + strandat 1965.126 kb on - strandat 1965.126 kb on - strandat 1965.126 kb on - strandat 1965.126 kb on - strandat 1965.126 kb on - strandat 1965.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xanthosine 10 mM (C)
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1,962,010 - PFLU_RS08850 0.38 +0.8
1,962,498 + PFLU_RS08850 0.73 -0.4
1,962,498 + PFLU_RS08850 0.73 -0.8
1,962,498 + PFLU_RS08850 0.73 -0.4
1,962,498 + PFLU_RS08850 0.73 -0.8
1,962,499 - PFLU_RS08850 0.73 -0.5
1,962,499 - PFLU_RS08850 0.73 +0.2
1,962,499 - PFLU_RS08850 0.73 -0.9
1,962,622 + PFLU_RS08850 0.81 -0.4
1,962,623 - PFLU_RS08850 0.81 +0.6
1,962,738 - PFLU_RS08850 0.90 +1.5
1,962,789 + -2.0
1,962,789 + +2.0
1,962,790 - +0.3
1,962,790 - -2.4
1,962,978 + -1.8
1,962,978 + +1.5
1,962,978 + +1.6
1,962,979 - +1.5
1,962,984 + -0.4
1,963,044 + PFLU_RS08855 0.13 +1.5
1,963,060 + PFLU_RS08855 0.14 +2.2
1,963,060 + PFLU_RS08855 0.14 -1.4
1,963,119 + PFLU_RS08855 0.19 -1.4
1,963,120 - PFLU_RS08855 0.19 +0.2
1,963,120 - PFLU_RS08855 0.19 +1.5
1,963,509 + PFLU_RS08855 0.49 +0.9
1,963,614 + PFLU_RS08855 0.58 +3.2
1,963,614 + PFLU_RS08855 0.58 -2.8
1,963,614 + PFLU_RS08855 0.58 -0.4
1,963,614 + PFLU_RS08855 0.58 -0.2
1,963,614 + PFLU_RS08855 0.58 -1.1
1,963,614 + PFLU_RS08855 0.58 +0.2
1,963,614 + PFLU_RS08855 0.58 +0.2
1,963,614 + PFLU_RS08855 0.58 +1.0
1,963,614 + PFLU_RS08855 0.58 +0.6
1,963,615 - PFLU_RS08855 0.58 -1.9
1,963,615 - PFLU_RS08855 0.58 +1.2
1,963,615 - PFLU_RS08855 0.58 +0.2
1,963,615 - PFLU_RS08855 0.58 -0.0
1,963,615 - PFLU_RS08855 0.58 -0.5
1,963,615 - PFLU_RS08855 0.58 -0.1
1,963,620 + PFLU_RS08855 0.58 -1.0
1,963,620 + PFLU_RS08855 0.58 -2.1
1,963,620 + PFLU_RS08855 0.58 +0.2
1,963,620 + PFLU_RS08855 0.58 -2.9
1,963,620 + PFLU_RS08855 0.58 +0.9
1,963,620 + PFLU_RS08855 0.58 -0.8
1,963,620 + PFLU_RS08855 0.58 +0.9
1,963,620 + PFLU_RS08855 0.58 +0.2
1,963,620 + PFLU_RS08855 0.58 -2.1
1,963,620 + PFLU_RS08855 0.58 +0.5
1,963,620 + PFLU_RS08855 0.58 +1.1
1,963,620 + PFLU_RS08855 0.58 +2.8
1,963,621 - PFLU_RS08855 0.58 +1.2
1,963,621 - PFLU_RS08855 0.58 -0.2
1,963,621 - PFLU_RS08855 0.58 +0.8
1,963,621 - PFLU_RS08855 0.58 +0.2
1,963,621 - PFLU_RS08855 0.58 -0.5
1,963,621 - PFLU_RS08855 0.58 -0.5
1,963,621 - PFLU_RS08855 0.58 +1.4
1,963,621 - PFLU_RS08855 0.58 -0.9
1,963,621 - PFLU_RS08855 0.58 +1.1
1,964,070 + +1.0
1,964,071 - -1.4
1,964,155 + +0.5
1,964,156 - -0.8
1,964,156 - +0.0
1,964,156 - -2.1
1,964,181 + -2.1
1,964,182 - +1.4
1,964,182 - -1.4
1,964,184 + -2.1
1,964,184 + +0.2
1,964,184 + -3.0
1,964,185 - -1.1
1,964,185 - +0.9
1,964,185 - +1.2
1,964,185 - +0.0
1,964,185 - -1.9
1,964,185 - +0.6
1,964,215 + +1.5
1,964,215 + +0.2
1,964,215 + -2.2
1,964,215 + -0.1
1,964,215 + +0.2
1,964,216 - +0.2
1,964,216 - +1.9
1,964,216 - -1.8
1,964,216 - -1.8
1,964,219 + -1.7
1,964,220 - +1.1
1,964,220 - +2.5
1,964,243 + +0.5
1,964,243 + -1.4
1,964,243 + -2.4
1,964,243 + -1.4
1,964,244 - -2.1
1,964,244 - -2.9
1,964,405 + PFLU_RS08860 0.21 -0.9
1,964,406 - PFLU_RS08860 0.22 -1.5
1,964,758 + PFLU_RS08860 0.61 -1.7
1,964,758 + PFLU_RS08860 0.61 -2.9
1,964,758 + PFLU_RS08860 0.61 -1.1
1,965,002 + PFLU_RS08860 0.88 +0.6
1,965,099 - -1.8
1,965,122 + -0.8
1,965,122 + -0.9
1,965,122 + -0.0
1,965,123 - +0.2
1,965,123 - +0.4
1,965,123 - -0.9
1,965,123 - +1.5
1,965,123 - +1.7
1,965,123 - +0.7
1,965,123 - +1.2
1,965,125 + -1.6
1,965,125 + -1.9
1,965,125 + -1.9
1,965,125 + -0.5
1,965,126 - -2.2
1,965,126 - -0.4
1,965,126 - -0.4
1,965,126 - -0.7
1,965,126 - +0.6
1,965,126 - -1.4

Or see this region's nucleotide sequence