Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00510

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00500 and BPHYT_RS00505 are separated by 184 nucleotidesBPHYT_RS00505 and BPHYT_RS00510 are separated by 51 nucleotidesBPHYT_RS00510 and BPHYT_RS00515 are separated by 54 nucleotidesBPHYT_RS00515 and BPHYT_RS00520 are separated by 193 nucleotides BPHYT_RS00500: BPHYT_RS00500 - hypothetical protein, at 121,647 to 122,987 _RS00500 BPHYT_RS00505: BPHYT_RS00505 - glyoxalase, at 123,172 to 123,570 _RS00505 BPHYT_RS00510: BPHYT_RS00510 - S-(hydroxymethyl)glutathione dehydrogenase, at 123,622 to 124,731 _RS00510 BPHYT_RS00515: BPHYT_RS00515 - regulator, at 124,786 to 125,061 _RS00515 BPHYT_RS00520: BPHYT_RS00520 - glutamate--cysteine ligase, at 125,255 to 126,853 _RS00520 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 122.668 kb on + strand, within BPHYT_RS00500at 122.668 kb on + strand, within BPHYT_RS00500at 122.669 kb on - strand, within BPHYT_RS00500at 122.669 kb on - strand, within BPHYT_RS00500at 122.839 kb on - strand, within BPHYT_RS00500at 122.912 kb on - strandat 122.963 kb on + strandat 122.964 kb on - strandat 122.964 kb on - strandat 122.964 kb on - strandat 123.020 kb on + strandat 123.057 kb on + strandat 123.058 kb on - strandat 123.125 kb on + strandat 123.125 kb on + strandat 123.185 kb on + strandat 123.221 kb on + strand, within BPHYT_RS00505at 123.231 kb on - strand, within BPHYT_RS00505at 123.419 kb on + strand, within BPHYT_RS00505at 123.420 kb on - strand, within BPHYT_RS00505at 123.605 kb on - strandat 123.605 kb on - strandat 124.010 kb on + strand, within BPHYT_RS00510at 124.047 kb on + strand, within BPHYT_RS00510at 124.047 kb on + strand, within BPHYT_RS00510at 124.295 kb on - strand, within BPHYT_RS00510at 124.328 kb on + strand, within BPHYT_RS00510at 124.329 kb on - strand, within BPHYT_RS00510at 124.352 kb on + strand, within BPHYT_RS00510at 124.369 kb on - strand, within BPHYT_RS00510at 124.608 kb on + strand, within BPHYT_RS00510at 124.747 kb on - strandat 125.054 kb on + strandat 125.082 kb on - strandat 125.095 kb on + strandat 125.218 kb on - strandat 125.256 kb on + strandat 125.256 kb on + strandat 125.398 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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122,668 + BPHYT_RS00500 0.76 +0.0
122,668 + BPHYT_RS00500 0.76 +0.1
122,669 - BPHYT_RS00500 0.76 +0.5
122,669 - BPHYT_RS00500 0.76 -0.6
122,839 - BPHYT_RS00500 0.89 -0.1
122,912 - -0.2
122,963 + -0.3
122,964 - +0.4
122,964 - -0.9
122,964 - +0.4
123,020 + +2.5
123,057 + -0.1
123,058 - -1.8
123,125 + -0.9
123,125 + -0.3
123,185 + -0.0
123,221 + BPHYT_RS00505 0.12 +0.8
123,231 - BPHYT_RS00505 0.15 +0.7
123,419 + BPHYT_RS00505 0.62 -0.4
123,420 - BPHYT_RS00505 0.62 +0.2
123,605 - +0.4
123,605 - +0.7
124,010 + BPHYT_RS00510 0.35 -0.3
124,047 + BPHYT_RS00510 0.38 -0.4
124,047 + BPHYT_RS00510 0.38 -0.3
124,295 - BPHYT_RS00510 0.61 -0.9
124,328 + BPHYT_RS00510 0.64 +0.4
124,329 - BPHYT_RS00510 0.64 +0.1
124,352 + BPHYT_RS00510 0.66 +0.5
124,369 - BPHYT_RS00510 0.67 -0.5
124,608 + BPHYT_RS00510 0.89 +0.2
124,747 - +0.1
125,054 + -0.1
125,082 - +0.3
125,095 + -0.4
125,218 - +0.3
125,256 + -0.5
125,256 + -0.4
125,398 + +1.1

Or see this region's nucleotide sequence