Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02310 and BPHYT_RS02315 are separated by 286 nucleotides BPHYT_RS02315 and BPHYT_RS02320 are separated by 118 nucleotides
BPHYT_RS02310: BPHYT_RS02310 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 529,946 to 531,016
_RS02310
BPHYT_RS02315: BPHYT_RS02315 - hypothetical protein, at 531,303 to 531,560
_RS02315
BPHYT_RS02320: BPHYT_RS02320 - 3-oxoadipate enol-lactonase, at 531,679 to 532,467
_RS02320
Position (kb) 531
532 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.487 kb on + strand, within BPHYT_RS02310 at 530.487 kb on + strand, within BPHYT_RS02310 at 530.491 kb on - strand, within BPHYT_RS02310 at 530.554 kb on + strand, within BPHYT_RS02310 at 530.619 kb on + strand, within BPHYT_RS02310 at 530.884 kb on - strand, within BPHYT_RS02310 at 531.203 kb on - strand at 531.203 kb on - strand at 531.220 kb on + strand at 531.220 kb on + strand at 531.221 kb on - strand at 531.243 kb on + strand at 531.244 kb on - strand at 531.269 kb on + strand at 531.270 kb on - strand at 531.270 kb on - strand at 531.270 kb on - strand at 531.270 kb on - strand at 531.361 kb on - strand, within BPHYT_RS02315 at 531.439 kb on + strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.440 kb on - strand, within BPHYT_RS02315 at 531.532 kb on + strand, within BPHYT_RS02315 at 531.532 kb on + strand, within BPHYT_RS02315 at 531.533 kb on - strand, within BPHYT_RS02315 at 531.533 kb on - strand, within BPHYT_RS02315 at 531.547 kb on + strand at 531.547 kb on + strand at 531.548 kb on - strand at 531.573 kb on + strand at 531.574 kb on - strand at 531.606 kb on + strand at 531.606 kb on + strand at 531.607 kb on - strand at 531.617 kb on + strand at 531.618 kb on - strand at 531.680 kb on + strand at 531.796 kb on + strand, within BPHYT_RS02320 at 531.797 kb on - strand, within BPHYT_RS02320 at 531.797 kb on - strand, within BPHYT_RS02320 at 531.807 kb on + strand, within BPHYT_RS02320 at 531.807 kb on + strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.879 kb on + strand, within BPHYT_RS02320 at 531.880 kb on - strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.923 kb on + strand, within BPHYT_RS02320 at 531.924 kb on - strand, within BPHYT_RS02320 at 531.949 kb on + strand, within BPHYT_RS02320 at 531.949 kb on + strand, within BPHYT_RS02320 at 532.206 kb on + strand, within BPHYT_RS02320 at 532.207 kb on - strand, within BPHYT_RS02320 at 532.314 kb on - strand, within BPHYT_RS02320 at 532.329 kb on - strand, within BPHYT_RS02320 at 532.433 kb on + strand at 532.434 kb on - strand at 532.434 kb on - strand at 532.549 kb on + strand at 532.549 kb on + strand at 532.549 kb on + strand at 532.550 kb on - strand at 532.550 kb on - strand at 532.550 kb on - strand at 532.551 kb on + strand at 532.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 530,487 + BPHYT_RS02310 0.51 -0.1 530,487 + BPHYT_RS02310 0.51 -0.5 530,491 - BPHYT_RS02310 0.51 -0.2 530,554 + BPHYT_RS02310 0.57 -0.1 530,619 + BPHYT_RS02310 0.63 -0.0 530,884 - BPHYT_RS02310 0.88 -0.1 531,203 - -0.2 531,203 - -0.8 531,220 + -0.1 531,220 + +0.2 531,221 - +0.4 531,243 + -0.4 531,244 - +0.2 531,269 + +0.3 531,270 - -0.5 531,270 - +1.3 531,270 - -0.2 531,270 - +0.3 531,361 - BPHYT_RS02315 0.22 +0.2 531,439 + BPHYT_RS02315 0.53 +1.2 531,440 - BPHYT_RS02315 0.53 +1.0 531,440 - BPHYT_RS02315 0.53 -0.1 531,440 - BPHYT_RS02315 0.53 -0.3 531,440 - BPHYT_RS02315 0.53 +0.3 531,440 - BPHYT_RS02315 0.53 +1.0 531,440 - BPHYT_RS02315 0.53 +0.3 531,532 + BPHYT_RS02315 0.89 +0.2 531,532 + BPHYT_RS02315 0.89 +0.1 531,533 - BPHYT_RS02315 0.89 -0.4 531,533 - BPHYT_RS02315 0.89 +0.2 531,547 + +0.1 531,547 + -0.1 531,548 - -0.2 531,573 + -0.2 531,574 - -0.1 531,606 + -0.3 531,606 + -0.2 531,607 - -0.6 531,617 + -0.1 531,618 - +0.0 531,680 + +1.1 531,796 + BPHYT_RS02320 0.15 +0.2 531,797 - BPHYT_RS02320 0.15 -0.2 531,797 - BPHYT_RS02320 0.15 -0.1 531,807 + BPHYT_RS02320 0.16 -0.8 531,807 + BPHYT_RS02320 0.16 -0.1 531,808 - BPHYT_RS02320 0.16 +0.2 531,808 - BPHYT_RS02320 0.16 +0.4 531,808 - BPHYT_RS02320 0.16 -0.4 531,879 + BPHYT_RS02320 0.25 +0.3 531,880 - BPHYT_RS02320 0.25 +0.4 531,886 + BPHYT_RS02320 0.26 -0.3 531,886 + BPHYT_RS02320 0.26 +0.1 531,886 + BPHYT_RS02320 0.26 -1.2 531,923 + BPHYT_RS02320 0.31 +1.9 531,924 - BPHYT_RS02320 0.31 +0.3 531,949 + BPHYT_RS02320 0.34 +0.0 531,949 + BPHYT_RS02320 0.34 -0.0 532,206 + BPHYT_RS02320 0.67 -0.1 532,207 - BPHYT_RS02320 0.67 -0.5 532,314 - BPHYT_RS02320 0.80 +1.1 532,329 - BPHYT_RS02320 0.82 +0.0 532,433 + -2.1 532,434 - +0.5 532,434 - -0.6 532,549 + -0.5 532,549 + +0.1 532,549 + -0.4 532,550 - -0.1 532,550 - +0.5 532,550 - +0.1 532,551 + +0.0 532,552 - -0.8
Or see this region's nucleotide sequence