Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3106

Experiment: HNL05_cps7_0.1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HNL05_cps7_0.1MOI
3,949,554	+		BT3105	0.10	+2.8
3,949,576	+		BT3105	0.12	+1.0
3,949,576	+		BT3105	0.12	-0.4
3,949,609	+		BT3105	0.16	-0.6
3,949,617	+		BT3105	0.16	-1.6
3,949,630	+		BT3105	0.18	-2.3
3,949,630	+		BT3105	0.18	+2.1
3,949,631	-		BT3105	0.18	-0.6
3,949,631	-		BT3105	0.18	+1.0
3,949,634	+		BT3105	0.18	-2.0
3,949,651	-		BT3105	0.20	-0.0
3,949,665	-				-1.8
3,949,665	-		BT3105	0.21	-1.6
3,949,687	-		BT3105	0.23	+0.8
3,949,730	+		BT3105	0.27	+1.4
3,949,893	+		BT3105	0.43	-1.0
3,949,893	+		BT3105	0.43	-2.0
3,949,893	+		BT3105	0.43	-1.8
3,949,948	+				+0.6
3,949,948	+		BT3105	0.49	+1.2
3,949,949	-		BT3105	0.49	-0.1
3,949,953	+		BT3105	0.49	-0.8
3,949,954	-		BT3105	0.49	-0.9
3,949,991	-		BT3105	0.53	-0.9
3,950,029	-		BT3105	0.56	-1.6
3,950,032	-		BT3105	0.57	-0.2
3,950,055	+		BT3105	0.59	-2.5
3,950,055	+		BT3105	0.59	-0.0
3,950,058	-		BT3105	0.59	-1.6
3,950,120	-		BT3105	0.65	+0.9
3,950,120	-		BT3105	0.65	-2.2
3,950,126	-		BT3105	0.66	-2.7
3,950,146	-		BT3105	0.68	-0.5
3,950,266	+		BT3105	0.79	-1.2
3,950,266	+		BT3105	0.79	-2.0
3,950,266	+		BT3105	0.79	-2.5
3,950,267	-		BT3105	0.79	-2.5
3,950,287	+		BT3105	0.81	+1.5
3,950,287	+		BT3105	0.81	-1.8
3,950,299	+		BT3105	0.83	-1.6
3,950,302	-		BT3105	0.83	-1.3
3,950,303	+		BT3105	0.83	-1.9
3,950,303	+		BT3105	0.83	+1.0
3,950,303	+		BT3105	0.83	-0.6
3,950,304	-		BT3105	0.83	-1.6
3,950,323	+		BT3105	0.85	-1.3
3,950,324	-		BT3105	0.85	+3.0
3,950,330	-		BT3105	0.86	-0.0
3,950,399	-				-2.3
3,950,461	-				-0.0
3,950,478	+				+1.0
3,950,479	-				-0.4
3,950,485	+				-0.5
3,950,498	-				-1.8
3,950,515	+				-2.1
3,950,524	+				-0.0
3,950,540	+				-0.4
3,950,541	-				-1.8
3,950,542	+				-1.5
3,950,542	+				+0.7
3,950,642	+				-1.3
3,950,686	+		BT3106	0.10	-2.0
3,950,686	+		BT3106	0.10	-2.7
3,950,686	+		BT3106	0.10	+0.7
3,950,686	+		BT3106	0.10	-0.1
3,950,687	-		BT3106	0.10	-1.8
3,950,709	-		BT3106	0.12	+0.7
3,950,710	+		BT3106	0.12	-3.4
3,950,824	-		BT3106	0.19	-3.1
3,950,826	-		BT3106	0.19	+0.6
3,950,826	-		BT3106	0.19	-1.4
3,950,841	+		BT3106	0.20	-1.4
3,950,842	-		BT3106	0.20	-1.3
3,950,869	+		BT3106	0.21	-1.5
3,950,870	-		BT3106	0.22	-2.7
3,950,898	-		BT3106	0.23	-1.4
3,950,907	-		BT3106	0.24	-2.9
3,950,910	+		BT3106	0.24	+1.5
3,950,914	-		BT3106	0.24	-0.6
3,950,914	-		BT3106	0.24	-1.7
3,950,915	+		BT3106	0.24	+0.1
3,950,916	-		BT3106	0.24	-2.7
3,950,916	-		BT3106	0.24	-1.1
3,950,984	+		BT3106	0.28	-2.0
3,951,081	-		BT3106	0.34	-0.6
3,951,123	+		BT3106	0.37	+0.5
3,951,199	-		BT3106	0.41	+1.3
3,951,208	-		BT3106	0.42	-1.8
3,951,231	+		BT3106	0.43	+0.4
3,951,232	-		BT3106	0.43	-0.2
3,951,253	+		BT3106	0.45	-1.6
3,951,275	-		BT3106	0.46	+0.3
3,951,336	+		BT3106	0.50	-1.3
3,951,337	-		BT3106	0.50	-1.8
3,951,370	-		BT3106	0.52	-0.7
3,951,392	+		BT3106	0.53	-1.2
3,951,416	+		BT3106	0.55	-2.7
3,951,431	-		BT3106	0.55	-0.8
3,951,434	+		BT3106	0.56	+1.0
3,951,479	+		BT3106	0.58	+0.8
3,951,480	-		BT3106	0.58	-0.3
3,951,490	+		BT3106	0.59	-1.3
3,951,537	+		BT3106	0.62	+1.7
3,951,563	+		BT3106	0.63	-3.3
3,951,564	-		BT3106	0.64	-0.0
3,951,741	-		BT3106	0.74	-2.0
3,951,755	-		BT3106	0.75	-1.3
3,951,759	+		BT3106	0.75	-1.6
3,951,771	-		BT3106	0.76	-1.3
3,951,790	+		BT3106	0.77	+2.2
3,951,790	+		BT3106	0.77	-0.1
3,951,904	+		BT3106	0.84	-1.3
3,951,954	-		BT3106	0.87	-0.3
3,951,966	+		BT3106	0.88	-1.9
3,951,966	+		BT3106	0.88	-0.8
3,951,996	+		BT3106	0.90	-0.6
3,951,998	+		BT3106	0.90	-3.8
3,952,002	-				+0.8
3,952,007	+				+0.6
3,952,008	-				+1.4
3,952,025	-				-1.2
3,952,060	-				-1.3
3,952,062	+				-0.9
3,952,062	+				+1.3
3,952,063	-				-0.8
3,952,063	-				-0.6
3,952,076	+				-2.9
3,952,105	-				+2.1
3,952,120	-				-0.0
3,952,151	-				+2.5
3,952,171	-				-2.7
3,952,172	+				-0.8
3,952,173	-				-1.6
3,952,245	+				-1.7
3,952,316	-				-1.3
3,952,318	-				-1.3
3,952,380	-		BT3107	0.13	-1.1
3,952,382	+		BT3107	0.13	+2.5
3,952,400	-		BT3107	0.14	-1.7
3,952,403	+		BT3107	0.14	-1.3
3,952,403	+		BT3107	0.14	+1.1
3,952,403	+		BT3107	0.14	-1.9
3,952,404	-		BT3107	0.14	+0.4
3,952,404	-		BT3107	0.14	-3.0
3,952,406	-		BT3107	0.14	-1.3
3,952,406	-		BT3107	0.14	-1.6
3,952,406	-		BT3107	0.14	-0.0
3,952,406	-		BT3107	0.14	+1.7
3,952,406	-		BT3107	0.14	-1.3
3,952,445	+		BT3107	0.17	-1.6
3,952,494	-		BT3107	0.20	+0.0
3,952,502	-		BT3107	0.20	-1.0
3,952,515	+		BT3107	0.21	-0.4
3,952,516	-		BT3107	0.21	+1.0
3,952,516	-		BT3107	0.21	-1.7
3,952,524	+		BT3107	0.21	+0.3
3,952,604	+		BT3107	0.26	-0.7
3,952,605	-		BT3107	0.26	-1.2
3,952,605	-		BT3107	0.26	+0.2
3,952,624	-		BT3107	0.28	+0.6
3,952,637	-		BT3107	0.28	+3.1
3,952,667	+		BT3107	0.30	-1.9
3,952,859	+		BT3107	0.42	-1.7
3,952,861	+		BT3107	0.42	-1.3
3,952,869	-		BT3107	0.43	-2.0
3,952,910	+		BT3107	0.45	+0.1
3,952,911	-		BT3107	0.45	-2.1
3,952,911	-		BT3107	0.45	+0.4
3,952,986	+		BT3107	0.50	-0.6
3,953,045	+		BT3107	0.54	-0.6
3,953,072	+		BT3107	0.55	-1.9
3,953,085	-		BT3107	0.56	-1.2
3,953,111	+		BT3107	0.58	-1.7
3,953,111	+		BT3107	0.58	+1.0
3,953,114	-		BT3107	0.58	-0.9
3,953,122	+		BT3107	0.58	-3.2