Experiment: 4-hydroxyphenylacetic 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02690 and PFLU_RS02695 are separated by 332 nucleotides PFLU_RS02695 and PFLU_RS02700 are separated by 195 nucleotides PFLU_RS02700 and PFLU_RS02705 are separated by 3 nucleotides
PFLU_RS02690: PFLU_RS02690 - hypothetical protein, at 620,256 to 620,444
_RS02690
PFLU_RS02695: PFLU_RS02695 - azurin, at 620,777 to 621,223
_RS02695
PFLU_RS02700: PFLU_RS02700 - ammonia-dependent NAD(+) synthetase, at 621,419 to 622,246
_RS02700
PFLU_RS02705: PFLU_RS02705 - nicotinate phosphoribosyltransferase, at 622,250 to 623,464
_RS02705
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.456 kb on + strand at 620.506 kb on + strand at 620.506 kb on + strand at 620.506 kb on + strand at 620.507 kb on - strand at 620.507 kb on - strand at 620.507 kb on - strand at 620.537 kb on + strand at 620.549 kb on - strand at 620.549 kb on - strand at 620.549 kb on - strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.669 kb on + strand at 620.682 kb on + strand at 620.683 kb on - strand at 620.706 kb on + strand at 620.706 kb on + strand at 620.707 kb on - strand at 620.707 kb on - strand at 620.714 kb on + strand at 620.715 kb on - strand at 620.715 kb on - strand at 620.722 kb on + strand at 620.722 kb on + strand at 620.722 kb on + strand at 620.723 kb on - strand at 620.723 kb on - strand at 620.723 kb on - strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.754 kb on + strand at 620.754 kb on + strand at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.050 kb on + strand, within PFLU_RS02695 at 621.050 kb on + strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.217 kb on + strand at 621.218 kb on - strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.388 kb on + strand at 621.389 kb on - strand at 621.389 kb on - strand at 621.406 kb on + strand at 621.406 kb on + strand at 621.406 kb on + strand at 621.407 kb on - strand at 621.407 kb on - strand at 621.407 kb on - strand at 621.462 kb on + strand at 621.462 kb on + strand at 621.463 kb on - strand at 621.463 kb on - strand at 621.475 kb on + strand at 621.475 kb on + strand at 621.475 kb on + strand at 621.476 kb on - strand at 621.476 kb on - strand at 621.534 kb on + strand, within PFLU_RS02700 at 621.534 kb on + strand, within PFLU_RS02700 at 621.535 kb on - strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 622.001 kb on - strand, within PFLU_RS02700 at 622.235 kb on + strand at 622.236 kb on - strand at 622.236 kb on - strand at 622.236 kb on - strand at 622.236 kb on - strand at 622.261 kb on + strand at 622.261 kb on + strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.262 kb on - strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.274 kb on + strand at 622.275 kb on - strand at 622.275 kb on - strand at 622.275 kb on - strand at 622.275 kb on - strand at 622.275 kb on - strand at 622.296 kb on + strand at 622.296 kb on + strand at 622.296 kb on + strand at 622.296 kb on + strand at 622.297 kb on - strand at 622.297 kb on - strand at 622.384 kb on + strand, within PFLU_RS02705 at 622.384 kb on + strand, within PFLU_RS02705 at 622.385 kb on - strand, within PFLU_RS02705 at 622.385 kb on - strand, within PFLU_RS02705 at 622.385 kb on - strand, within PFLU_RS02705 at 622.385 kb on - strand, within PFLU_RS02705 at 622.482 kb on - strand, within PFLU_RS02705 at 622.561 kb on - strand, within PFLU_RS02705 at 622.561 kb on - strand, within PFLU_RS02705 at 622.638 kb on + strand, within PFLU_RS02705 at 622.638 kb on + strand, within PFLU_RS02705 at 622.638 kb on + strand, within PFLU_RS02705 at 622.638 kb on + strand, within PFLU_RS02705 at 622.639 kb on - strand, within PFLU_RS02705 at 622.710 kb on + strand, within PFLU_RS02705 at 622.805 kb on - strand, within PFLU_RS02705 at 623.008 kb on - strand, within PFLU_RS02705 at 623.170 kb on - strand, within PFLU_RS02705 at 623.170 kb on - strand, within PFLU_RS02705 at 623.170 kb on - strand, within PFLU_RS02705
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxyphenylacetic 2 mM (C) remove 620,428 + -2.3 620,428 + +0.1 620,428 + -0.0 620,428 + -1.1 620,428 + -0.7 620,428 + +0.7 620,428 + -1.7 620,428 + -1.5 620,428 + -0.5 620,428 + +0.1 620,429 - +2.3 620,429 - +0.9 620,429 - +0.6 620,429 - +0.5 620,429 - -0.9 620,429 - +0.7 620,429 - -2.2 620,429 - +0.3 620,429 - +0.9 620,429 - +0.1 620,429 - +0.5 620,432 + +0.2 620,432 + -1.6 620,432 + -2.3 620,432 + -0.5 620,432 + -0.5 620,432 + -0.5 620,433 - -0.7 620,433 - +2.1 620,433 - -0.3 620,433 - -0.4 620,433 - -0.9 620,433 - +2.3 620,456 + +0.3 620,506 + +1.0 620,506 + -1.9 620,506 + +1.2 620,507 - +1.4 620,507 - +0.4 620,507 - +2.2 620,537 + +0.2 620,549 - +0.3 620,549 - +0.9 620,549 - +1.0 620,621 + +0.4 620,621 + -0.7 620,621 + -1.8 620,621 + +0.4 620,621 + -1.3 620,621 + +2.3 620,622 - -1.7 620,622 - +0.7 620,622 - -0.8 620,622 - -1.5 620,635 + +0.9 620,635 + -1.1 620,635 + +0.4 620,635 + -0.5 620,635 + -0.6 620,635 + -3.0 620,635 + +0.3 620,635 + -0.9 620,636 - -1.3 620,636 - +1.8 620,636 - -0.2 620,636 - -1.5 620,636 - -0.6 620,636 - -0.4 620,636 - +0.6 620,636 - -0.0 620,669 + +0.2 620,682 + +0.4 620,683 - -2.5 620,706 + -1.2 620,706 + -0.1 620,707 - +0.2 620,707 - +3.3 620,714 + -1.3 620,715 - +0.1 620,715 - +1.3 620,722 + +0.4 620,722 + +1.5 620,722 + +5.6 620,723 - +0.3 620,723 - -0.5 620,723 - +0.6 620,747 + +0.7 620,747 + -0.7 620,747 + +0.4 620,747 + +2.1 620,747 + -0.7 620,747 + +0.3 620,747 + -0.9 620,747 + -2.5 620,747 + +1.4 620,747 + +0.5 620,747 + +0.6 620,747 + -0.1 620,747 + -0.8 620,747 + -0.8 620,747 + +1.9 620,748 - -1.1 620,748 - -0.3 620,748 - -1.5 620,748 - +0.7 620,748 - +0.7 620,748 - +0.5 620,748 - +1.3 620,748 - +1.5 620,748 - -2.0 620,748 - +0.3 620,748 - +0.3 620,754 + +0.2 620,754 + -0.7 620,974 + PFLU_RS02695 0.44 -1.5 620,974 + PFLU_RS02695 0.44 +2.9 620,974 + PFLU_RS02695 0.44 +1.1 620,974 + PFLU_RS02695 0.44 -0.5 620,974 + PFLU_RS02695 0.44 +1.5 620,974 + PFLU_RS02695 0.44 +1.7 620,974 + PFLU_RS02695 0.44 +1.9 620,975 - PFLU_RS02695 0.44 -3.2 620,975 - PFLU_RS02695 0.44 +2.2 620,975 - PFLU_RS02695 0.44 +0.9 620,975 - PFLU_RS02695 0.44 +0.9 620,975 - PFLU_RS02695 0.44 -0.1 621,044 - PFLU_RS02695 0.60 -1.6 621,044 - PFLU_RS02695 0.60 -1.8 621,044 - PFLU_RS02695 0.60 +0.5 621,044 - PFLU_RS02695 0.60 -1.7 621,044 - PFLU_RS02695 0.60 +2.9 621,050 + PFLU_RS02695 0.61 -1.8 621,050 + PFLU_RS02695 0.61 -0.6 621,051 - PFLU_RS02695 0.61 +0.9 621,051 - PFLU_RS02695 0.61 +0.3 621,051 - PFLU_RS02695 0.61 -0.1 621,051 - PFLU_RS02695 0.61 -0.8 621,051 - PFLU_RS02695 0.61 -0.9 621,051 - PFLU_RS02695 0.61 -2.0 621,051 - PFLU_RS02695 0.61 +1.9 621,158 + PFLU_RS02695 0.85 +2.1 621,158 + PFLU_RS02695 0.85 -0.1 621,158 + PFLU_RS02695 0.85 +0.2 621,158 + PFLU_RS02695 0.85 -0.8 621,158 + PFLU_RS02695 0.85 +0.1 621,158 + PFLU_RS02695 0.85 +0.3 621,158 + PFLU_RS02695 0.85 +1.0 621,159 - PFLU_RS02695 0.85 -0.0 621,159 - PFLU_RS02695 0.85 +1.9 621,159 - PFLU_RS02695 0.85 +1.5 621,217 + +0.9 621,218 - +1.9 621,221 + -1.4 621,221 + -0.3 621,221 + +0.4 621,221 + -0.6 621,221 + +1.1 621,222 - +0.3 621,222 - +2.2 621,222 - +1.4 621,222 - -0.2 621,222 - -0.8 621,222 - +0.4 621,222 - +0.7 621,222 - -0.4 621,388 + -0.0 621,389 - +0.9 621,389 - +1.3 621,406 + +0.3 621,406 + -1.3 621,406 + +1.5 621,407 - -0.5 621,407 - +2.0 621,407 - +0.8 621,462 + -0.4 621,462 + +0.3 621,463 - +0.9 621,463 - +0.3 621,475 + -0.4 621,475 + +0.0 621,475 + -0.7 621,476 - -0.1 621,476 - +1.1 621,534 + PFLU_RS02700 0.14 -1.3 621,534 + PFLU_RS02700 0.14 +1.9 621,535 - PFLU_RS02700 0.14 -1.5 621,786 + PFLU_RS02700 0.44 -1.2 621,786 + PFLU_RS02700 0.44 -1.7 621,786 + PFLU_RS02700 0.44 -0.5 621,787 - PFLU_RS02700 0.44 -0.6 621,787 - PFLU_RS02700 0.44 -1.1 621,787 - PFLU_RS02700 0.44 +3.4 621,787 - PFLU_RS02700 0.44 -0.3 621,787 - PFLU_RS02700 0.44 -0.7 621,787 - PFLU_RS02700 0.44 -0.1 621,787 - PFLU_RS02700 0.44 +0.9 621,787 - PFLU_RS02700 0.44 +0.9 621,787 - PFLU_RS02700 0.44 -1.6 622,001 - PFLU_RS02700 0.70 -1.5 622,235 + +0.2 622,236 - -0.1 622,236 - +2.4 622,236 - -0.8 622,236 - +1.1 622,261 + -0.7 622,261 + -2.1 622,262 - -0.3 622,262 - -2.0 622,262 - +0.3 622,262 - -0.6 622,262 - +1.1 622,262 - +0.5 622,274 + -2.7 622,274 + -2.0 622,274 + +1.7 622,274 + +0.2 622,274 + +0.9 622,274 + -0.9 622,274 + -0.1 622,274 + +1.1 622,275 - -0.7 622,275 - +1.3 622,275 - -2.8 622,275 - +0.2 622,275 - +1.2 622,296 + -1.3 622,296 + -1.0 622,296 + +0.8 622,296 + +1.3 622,297 - -0.3 622,297 - -0.3 622,384 + PFLU_RS02705 0.11 -0.7 622,384 + PFLU_RS02705 0.11 +0.5 622,385 - PFLU_RS02705 0.11 -0.9 622,385 - PFLU_RS02705 0.11 -0.7 622,385 - PFLU_RS02705 0.11 +0.7 622,385 - PFLU_RS02705 0.11 +0.8 622,482 - PFLU_RS02705 0.19 +0.5 622,561 - PFLU_RS02705 0.26 +0.6 622,561 - PFLU_RS02705 0.26 +0.4 622,638 + PFLU_RS02705 0.32 +0.2 622,638 + PFLU_RS02705 0.32 -2.3 622,638 + PFLU_RS02705 0.32 -1.7 622,638 + PFLU_RS02705 0.32 +2.4 622,639 - PFLU_RS02705 0.32 -0.8 622,710 + PFLU_RS02705 0.38 +0.4 622,805 - PFLU_RS02705 0.46 +0.9 623,008 - PFLU_RS02705 0.62 +0.6 623,170 - PFLU_RS02705 0.76 +0.6 623,170 - PFLU_RS02705 0.76 +0.8 623,170 - PFLU_RS02705 0.76 -1.3
Or see this region's nucleotide sequence