Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24345

Experiment: 4-hydroxyphenylacetic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxyphenylacetic 2 mM (C)
5,449,336	+		PFLU_RS24335	0.82	-1.6
5,449,336	+		PFLU_RS24335	0.82	-0.4
5,449,336	+		PFLU_RS24335	0.82	+0.3
5,449,337	-		PFLU_RS24335	0.82	-1.3
5,449,337	-		PFLU_RS24335	0.82	-0.3
5,449,337	-		PFLU_RS24335	0.82	+1.4
5,449,337	-		PFLU_RS24335	0.82	-0.5
5,449,375	-		PFLU_RS24335	0.86	+2.9
5,449,375	-		PFLU_RS24335	0.86	-1.1
5,449,447	+				-1.8
5,449,448	-				-0.9
5,449,448	-				+1.9
5,449,448	-				-1.5
5,449,476	+				+0.7
5,449,476	+				-1.3
5,449,476	+				-0.1
5,449,476	+				-2.5
5,449,477	-				+0.0
5,449,477	-				-1.3
5,449,477	-				-0.9
5,449,485	+				-0.1
5,449,485	+				-2.1
5,449,514	-				-0.6
5,449,514	-				+1.7
5,449,514	-				+1.7
5,449,514	-				-2.1
5,449,589	+				+1.5
5,449,589	+				+2.2
5,449,589	+				+0.1
5,449,589	+				+1.1
5,449,615	+				-1.1
5,449,615	+				+1.9
5,449,615	+				+0.7
5,449,615	+				-2.8
5,449,616	-				+0.2
5,449,616	-				-1.0
5,449,623	-				-2.8
5,449,628	+				-0.1
5,449,628	+				-2.0
5,449,647	+				-2.1
5,449,648	-				-1.3
5,449,648	-				+0.3
5,449,683	+				+0.0
5,449,683	+				-1.6
5,449,683	+				+0.5
5,449,684	-				+1.0
5,449,684	-				+0.4
5,449,768	+		PFLU_RS24340	0.22	-2.8
5,449,768	+		PFLU_RS24340	0.22	-0.2
5,449,768	+		PFLU_RS24340	0.22	+0.6
5,449,768	+		PFLU_RS24340	0.22	-0.8
5,449,768	+		PFLU_RS24340	0.22	+2.4
5,449,768	+		PFLU_RS24340	0.22	+0.5
5,449,769	-		PFLU_RS24340	0.22	+1.4
5,449,769	-		PFLU_RS24340	0.22	-1.6
5,449,769	-		PFLU_RS24340	0.22	+2.2
5,449,769	-		PFLU_RS24340	0.22	-0.3
5,449,829	-		PFLU_RS24340	0.34	+2.3
5,449,872	+		PFLU_RS24340	0.42	-0.3
5,449,873	-		PFLU_RS24340	0.42	-1.3
5,449,888	-		PFLU_RS24340	0.45	-1.9
5,449,888	-		PFLU_RS24340	0.45	+1.1
5,450,062	+		PFLU_RS24340	0.79	-0.3
5,450,062	+		PFLU_RS24340	0.79	+0.5
5,450,063	-		PFLU_RS24340	0.79	-0.0
5,450,141	+				-2.1
5,450,141	+				-1.3
5,450,141	+				+0.2
5,450,141	+				-3.0
5,450,141	+				-1.5
5,450,141	+				-1.7
5,450,141	+				-0.5
5,450,141	+				-1.6
5,450,141	+				-1.9
5,450,141	+				-0.6
5,450,141	+				+1.1
5,450,141	+				+0.2
5,450,141	+				-0.5
5,450,141	+				+1.6
5,450,141	+				+0.1
5,450,141	+				+0.5
5,450,141	+				+1.1
5,450,141	+				-0.3
5,450,141	+				-0.3
5,450,141	+				+0.4
5,450,141	+				+0.4
5,450,141	+				-1.3
5,450,141	+				-2.3
5,450,142	-				-1.1
5,450,142	-				+0.0
5,450,142	-				-0.6
5,450,142	-				-2.0
5,450,142	-				+1.5
5,450,142	-				+1.2
5,450,142	-				+1.3
5,450,142	-				+1.5
5,450,142	-				+0.5
5,450,142	-				-0.6
5,450,142	-				+2.2
5,450,142	-				-0.1
5,450,142	-				-2.2
5,450,142	-				+0.7
5,450,142	-				+1.0
5,450,142	-				-1.6
5,450,170	+				-0.6
5,450,170	+				+0.9
5,450,170	+				+0.0
5,450,171	-				+0.0
5,450,171	-				+1.7
5,450,171	-				+1.1
5,450,171	-				+1.7
5,450,171	-				-1.2
5,450,171	-				+0.1
5,450,205	+				-0.0
5,450,206	-				+2.0
5,450,218	+				-1.9
5,450,218	+				-0.2
5,450,218	+				-0.7
5,450,218	+				-0.1
5,450,218	+				-0.9
5,450,218	+				-2.8
5,450,218	+				+4.6
5,450,218	+				-1.4
5,450,219	-				+0.8
5,450,219	-				+0.5
5,450,219	-				+1.3
5,450,219	-				-1.4
5,450,219	-				-2.0
5,450,219	-				-1.0
5,450,219	-				-0.3
5,450,219	-				+2.5
5,450,219	-				-1.5
5,450,219	-				+0.1
5,450,219	-				+0.1
5,450,219	-				-1.3
5,450,219	-				-0.3
5,450,219	-				-1.5
5,450,219	-				-1.0
5,450,219	-				+1.7
5,450,219	-				-1.5
5,450,261	+				+1.2
5,450,262	-				+0.5
5,450,310	-				-2.4
5,450,721	+		PFLU_RS24345	0.49	-0.6
5,450,721	+		PFLU_RS24345	0.49	-2.2
5,450,791	+		PFLU_RS24345	0.56	+1.5
5,450,829	+		PFLU_RS24345	0.60	+0.9
5,450,829	+		PFLU_RS24345	0.60	+1.0
5,450,829	+		PFLU_RS24345	0.60	+1.7
5,450,885	+		PFLU_RS24345	0.66	+0.3
5,450,885	+		PFLU_RS24345	0.66	-0.5
5,450,885	+		PFLU_RS24345	0.66	+2.2
5,450,885	+		PFLU_RS24345	0.66	-2.2
5,450,885	+		PFLU_RS24345	0.66	-0.4
5,450,886	-		PFLU_RS24345	0.66	+0.7
5,450,886	-		PFLU_RS24345	0.66	-0.3
5,450,886	-		PFLU_RS24345	0.66	+0.1
5,450,886	-		PFLU_RS24345	0.66	+0.2
5,450,886	-		PFLU_RS24345	0.66	-1.8
5,450,886	-		PFLU_RS24345	0.66	+0.0
5,450,927	+		PFLU_RS24345	0.70	-1.3
5,450,928	-		PFLU_RS24345	0.70	-1.2
5,450,928	-		PFLU_RS24345	0.70	-1.3
5,451,057	+		PFLU_RS24345	0.84	-2.2
5,451,057	+		PFLU_RS24345	0.84	+0.5
5,451,061	-		PFLU_RS24345	0.84	-0.6
5,451,061	-		PFLU_RS24345	0.84	+0.9
5,451,061	-		PFLU_RS24345	0.84	-0.1
5,451,120	+				-2.9
5,451,120	+				-0.1
5,451,120	+				-2.2
5,451,120	+				+0.1
5,451,121	-				-0.1
5,451,121	-				-2.2
5,451,189	+				-2.5
5,451,213	+				+1.2
5,451,213	+				+1.3
5,451,237	+				+0.8
5,451,237	+				+0.7
5,451,250	+				+1.7
5,451,250	+				+2.4
5,451,250	+				+1.4
5,451,250	+				+1.2
5,451,250	+				-0.6
5,451,250	+				+1.3
5,451,250	+				+0.8
5,451,250	+				-0.9
5,451,250	+				+0.7
5,451,250	+				-1.5
5,451,251	-				-0.0
5,451,251	-				+0.7
5,451,251	-				+2.2
5,451,251	-				+0.3
5,451,251	-				-0.3
5,451,283	-				-0.7
5,451,283	-				-2.8
5,451,283	-				+2.1
5,451,283	-				+0.9
5,451,302	+				-3.1
5,451,302	+				-0.2
5,451,302	+				-0.2
5,451,302	+				+0.3
5,451,302	+				+0.7
5,451,302	+				-1.9
5,451,302	+				+1.7
5,451,302	+				-1.9
5,451,302	+				-1.1
5,451,302	+				-0.8
5,451,302	+				+1.9
5,451,303	-				+1.4
5,451,303	-				+1.3
5,451,303	-				-0.4
5,451,303	-				+0.2
5,451,303	-				-0.4
5,451,303	-				+1.3
5,451,303	-				-1.2
5,451,303	-				+0.6
5,451,303	-				+0.8
5,451,303	-				+0.6
5,451,303	-				+0.6
5,451,303	-				-0.3
5,451,303	-				-0.6
5,451,303	-				-0.6
5,451,303	-				+2.5
5,451,303	-				-2.8
5,451,303	-				+0.5
5,451,303	-				-1.6
5,451,303	-				-0.3
5,451,303	-				+1.9
5,451,303	-				-1.8
5,451,303	-				-0.5
5,451,304	+				+0.1
5,451,304	+				-1.3
5,451,304	+				+0.8
5,451,304	+				-1.0
5,451,304	+				+1.3
5,451,304	+				+2.3
5,451,305	-				-1.1
5,451,305	-				+0.6
5,451,305	-				-0.1
5,451,305	-				+0.3
5,451,305	-				-1.9
5,451,305	-				+2.7
5,451,305	-				+0.7
5,451,305	-				-0.7
5,451,305	-				-0.6
5,451,305	-				+1.0
5,451,305	-				+0.7
5,451,305	-				-0.3
5,451,305	-				+1.1
5,451,460	+				-0.2
5,451,460	+				-0.2
5,451,460	+				+1.5
5,451,460	+				-0.1
5,451,460	+				+1.1
5,451,460	+				+1.0
5,451,460	+				+1.7
5,451,460	+				-1.3
5,451,460	+				-0.4
5,451,461	-				-0.2
5,451,461	-				+1.3
5,451,461	-				+1.9
5,451,461	-				-0.2
5,451,461	-				+0.3
5,451,461	-				-2.1
5,451,563	+				+0.7
5,451,563	+				+2.2
5,451,563	+				+1.0
5,451,564	-				-0.7
5,451,564	-				+0.2
5,451,578	+				-0.5
5,451,578	+				+1.8
5,451,579	-				-0.5
5,451,579	-				-0.7
5,451,640	+		PFLU_RS24350	0.12	+0.7
5,451,641	-		PFLU_RS24350	0.12	+0.7
5,451,641	-		PFLU_RS24350	0.12	+0.8
5,451,641	-		PFLU_RS24350	0.12	-0.7
5,451,832	+		PFLU_RS24350	0.19	+1.7
5,451,833	-		PFLU_RS24350	0.20	-0.4
5,451,991	+		PFLU_RS24350	0.26	+1.3
5,451,991	+		PFLU_RS24350	0.26	-0.8
5,451,991	+		PFLU_RS24350	0.26	+1.5
5,451,991	+		PFLU_RS24350	0.26	-0.2
5,451,991	+		PFLU_RS24350	0.26	+0.9
5,451,992	-		PFLU_RS24350	0.26	+1.3
5,451,992	-		PFLU_RS24350	0.26	+0.5
5,451,992	-		PFLU_RS24350	0.26	-2.2
5,451,992	-		PFLU_RS24350	0.26	-1.3
5,451,992	-		PFLU_RS24350	0.26	-2.9
5,451,992	-		PFLU_RS24350	0.26	+0.5
5,451,992	-		PFLU_RS24350	0.26	-1.8
5,452,028	+		PFLU_RS24350	0.27	+0.1
5,452,029	-		PFLU_RS24350	0.27	+0.1
5,452,084	+		PFLU_RS24350	0.29	-0.2
5,452,084	+		PFLU_RS24350	0.29	-1.9
5,452,084	+		PFLU_RS24350	0.29	+1.5
5,452,084	+		PFLU_RS24350	0.29	+0.5
5,452,085	-		PFLU_RS24350	0.29	-0.4
5,452,085	-		PFLU_RS24350	0.29	-1.1
5,452,085	-		PFLU_RS24350	0.29	-1.3
5,452,085	-		PFLU_RS24350	0.29	-1.0
5,452,085	-		PFLU_RS24350	0.29	-0.5
5,452,085	-		PFLU_RS24350	0.29	-0.9
5,452,085	-		PFLU_RS24350	0.29	+0.4
5,452,085	-		PFLU_RS24350	0.29	-0.3
5,452,085	-		PFLU_RS24350	0.29	+3.7
5,452,085	-		PFLU_RS24350	0.29	-0.1
5,452,085	-		PFLU_RS24350	0.29	-1.0
5,452,085	-		PFLU_RS24350	0.29	-2.2
5,452,085	-		PFLU_RS24350	0.29	-1.9
5,452,085	-		PFLU_RS24350	0.29	+0.1
5,452,154	-		PFLU_RS24350	0.32	+0.1