Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18110

Experiment: 4-hydroxyphenylacetic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxyphenylacetic 2 mM (C)
4,109,346	+		PFLU_RS18100	0.68	-0.4
4,109,346	+		PFLU_RS18100	0.68	-0.9
4,109,346	+		PFLU_RS18100	0.68	-0.5
4,109,347	-		PFLU_RS18100	0.68	+0.0
4,109,347	-		PFLU_RS18100	0.68	-1.1
4,109,347	-		PFLU_RS18100	0.68	+1.2
4,109,347	-		PFLU_RS18100	0.68	+1.2
4,109,348	+		PFLU_RS18100	0.68	+1.8
4,109,348	+		PFLU_RS18100	0.68	-0.8
4,109,348	+		PFLU_RS18100	0.68	-2.2
4,109,348	+		PFLU_RS18100	0.68	+0.5
4,109,348	+		PFLU_RS18100	0.68	+0.2
4,109,349	-		PFLU_RS18100	0.69	-0.1
4,109,349	-		PFLU_RS18100	0.69	+0.5
4,109,411	+		PFLU_RS18100	0.77	-0.5
4,109,411	+		PFLU_RS18100	0.77	-0.7
4,109,411	+		PFLU_RS18100	0.77	+0.5
4,109,412	-		PFLU_RS18100	0.77	-1.1
4,109,412	-		PFLU_RS18100	0.77	-0.3
4,109,412	-		PFLU_RS18100	0.77	-0.7
4,109,412	-		PFLU_RS18100	0.77	+0.6
4,109,412	-		PFLU_RS18100	0.77	-2.2
4,109,412	-		PFLU_RS18100	0.77	-0.3
4,109,412	-		PFLU_RS18100	0.77	-1.6
4,109,412	-		PFLU_RS18100	0.77	+1.1
4,109,412	-		PFLU_RS18100	0.77	+0.1
4,109,412	-		PFLU_RS18100	0.77	+2.0
4,109,412	-		PFLU_RS18100	0.77	-1.3
4,109,412	-		PFLU_RS18100	0.77	+2.2
4,109,412	-		PFLU_RS18100	0.77	+1.6
4,109,412	-		PFLU_RS18100	0.77	-0.2
4,109,598	+				+1.7
4,109,622	-				+0.1
4,109,680	+				+0.7
4,109,699	-				+1.8
4,110,105	+				-0.8
4,110,106	-				-0.6
4,110,391	+		PFLU_RS18110	0.12	-0.8
4,110,391	+		PFLU_RS18110	0.12	-0.4
4,110,391	+		PFLU_RS18110	0.12	+0.4
4,110,392	-		PFLU_RS18110	0.12	-1.3
4,110,392	-		PFLU_RS18110	0.12	-0.6
4,110,392	-		PFLU_RS18110	0.12	+2.5
4,110,460	-		PFLU_RS18110	0.19	+0.5
4,110,472	+		PFLU_RS18110	0.20	-1.5
4,110,473	-		PFLU_RS18110	0.20	-1.2
4,110,474	+		PFLU_RS18110	0.20	-1.2
4,110,588	-		PFLU_RS18110	0.32	+0.4
4,110,639	+		PFLU_RS18110	0.38	+0.2
4,110,640	-		PFLU_RS18110	0.38	+0.5
4,110,640	-		PFLU_RS18110	0.38	+0.7
4,110,664	+		PFLU_RS18110	0.40	+1.6
4,110,678	+		PFLU_RS18110	0.42	+0.2
4,110,678	+		PFLU_RS18110	0.42	-0.1
4,110,769	+		PFLU_RS18110	0.51	-0.3
4,110,769	+		PFLU_RS18110	0.51	-0.3
4,110,769	+		PFLU_RS18110	0.51	+1.5
4,110,770	-		PFLU_RS18110	0.51	-0.1
4,110,770	-		PFLU_RS18110	0.51	+0.1
4,110,770	-		PFLU_RS18110	0.51	+0.2
4,110,902	+		PFLU_RS18110	0.65	-1.0
4,110,903	-		PFLU_RS18110	0.65	-1.0
4,110,903	-		PFLU_RS18110	0.65	+0.2
4,110,916	+		PFLU_RS18110	0.66	-1.3
4,110,917	-		PFLU_RS18110	0.67	-0.3
4,111,237	+				-2.2
4,111,237	+				-0.3
4,111,237	+				-0.0
4,111,237	+				-0.9
4,111,237	+				+1.7
4,111,237	+				+0.2
4,111,237	+				+1.2
4,111,237	+				-3.3
4,111,238	-				+1.2
4,111,238	-				+0.7
4,111,238	-				-0.1
4,111,238	-				+0.1
4,111,238	-				-0.1
4,111,238	-				-0.3
4,111,238	-				-3.0
4,111,238	-				+1.1
4,111,238	-				-0.5
4,111,238	-				-2.6
4,111,238	-				-0.1
4,111,268	+				+0.2
4,111,269	-				+0.5
4,111,271	+				+2.1
4,111,272	-				+0.1
4,111,272	-				-1.1
4,111,289	-				+0.2
4,111,311	+				+2.5
4,111,311	+				-1.7
4,111,311	+				+1.0
4,111,311	+				-1.9
4,111,312	-				+0.6
4,111,312	-				+0.8
4,111,312	-				-0.3
4,111,312	-				-0.1
4,111,326	-				-0.2
4,111,346	+				+0.3
4,111,347	-				-3.4
4,111,488	+		PFLU_RS18115	0.26	+0.1
4,111,489	-		PFLU_RS18115	0.26	-0.5
4,111,587	-		PFLU_RS18115	0.44	+0.5
4,111,664	+		PFLU_RS18115	0.58	+0.5
4,111,664	+		PFLU_RS18115	0.58	-0.6
4,111,664	+		PFLU_RS18115	0.58	-0.4
4,111,664	+		PFLU_RS18115	0.58	+0.9
4,111,664	+		PFLU_RS18115	0.58	+2.9
4,111,664	+		PFLU_RS18115	0.58	-1.1
4,111,664	+		PFLU_RS18115	0.58	-1.1
4,111,664	+		PFLU_RS18115	0.58	-1.6
4,111,664	+		PFLU_RS18115	0.58	-0.1
4,111,665	-		PFLU_RS18115	0.59	-0.2
4,111,665	-		PFLU_RS18115	0.59	+1.2
4,111,665	-		PFLU_RS18115	0.59	+0.9
4,111,665	-		PFLU_RS18115	0.59	+0.2
4,111,955	+		PFLU_RS18120	0.27	+3.1
4,111,955	+		PFLU_RS18120	0.27	+1.7
4,111,955	+		PFLU_RS18120	0.27	+1.1
4,111,955	+		PFLU_RS18120	0.27	+0.4
4,111,956	-		PFLU_RS18120	0.28	+1.0
4,111,956	-		PFLU_RS18120	0.28	-1.1
4,112,031	+		PFLU_RS18120	0.65	-2.1
4,112,043	+		PFLU_RS18120	0.71	-1.9
4,112,043	+		PFLU_RS18120	0.71	-1.3
4,112,043	+		PFLU_RS18120	0.71	+0.5
4,112,044	-		PFLU_RS18120	0.72	-0.8
4,112,044	-		PFLU_RS18120	0.72	-2.1
4,112,048	+		PFLU_RS18120	0.74	-1.8
4,112,048	+		PFLU_RS18120	0.74	-0.7
4,112,048	+		PFLU_RS18120	0.74	+1.1
4,112,049	-		PFLU_RS18120	0.74	-1.8
4,112,049	-		PFLU_RS18120	0.74	+1.8
4,112,049	-		PFLU_RS18120	0.74	+1.2
4,112,049	-		PFLU_RS18120	0.74	+1.8
4,112,157	+				+0.7
4,112,157	+				+0.2
4,112,157	+				+0.1
4,112,157	+				-1.5
4,112,158	-				+1.2
4,112,158	-				-1.3
4,112,158	-				+0.6
4,112,158	-				-1.3
4,112,158	-				+1.0
4,112,158	-				-0.0
4,112,159	+				-1.1
4,112,159	+				-0.8
4,112,160	-				-1.8
4,112,199	+				-0.1
4,112,199	+				-1.5
4,112,199	+				-0.7
4,112,225	-				+1.2
4,112,225	-				-1.8