Experiment: 4-hydroxyphenylacetic 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS15935 and PFLU_RS15940 are separated by 45 nucleotides PFLU_RS15940 and PFLU_RS15945 are separated by 50 nucleotides PFLU_RS15945 and PFLU_RS15950 are separated by 13 nucleotides PFLU_RS15950 and PFLU_RS15955 are separated by 14 nucleotides
PFLU_RS15935: PFLU_RS15935 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 3,621,836 to 3,622,693
_RS15935
PFLU_RS15940: PFLU_RS15940 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,622,739 to 3,623,131
_RS15940
PFLU_RS15945: PFLU_RS15945 - MFS transporter, at 3,623,182 to 3,624,486
_RS15945
PFLU_RS15950: PFLU_RS15950 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 3,624,500 to 3,625,303
_RS15950
PFLU_RS15955: PFLU_RS15955 - 4-hydroxy-2-oxoheptanedioate aldolase, at 3,625,318 to 3,626,121
_RS15955
Position (kb) 3623
3624
3625 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3622.232 kb on + strand, within PFLU_RS15935 at 3622.233 kb on - strand, within PFLU_RS15935 at 3622.233 kb on - strand, within PFLU_RS15935 at 3622.613 kb on + strand at 3622.760 kb on + strand at 3622.760 kb on + strand at 3622.760 kb on + strand at 3622.761 kb on - strand at 3622.761 kb on - strand at 3622.914 kb on - strand, within PFLU_RS15940 at 3623.197 kb on - strand at 3623.197 kb on - strand at 3623.281 kb on + strand at 3623.398 kb on + strand, within PFLU_RS15945 at 3623.530 kb on + strand, within PFLU_RS15945 at 3623.530 kb on + strand, within PFLU_RS15945 at 3623.530 kb on + strand, within PFLU_RS15945 at 3623.530 kb on + strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.531 kb on - strand, within PFLU_RS15945 at 3623.950 kb on + strand, within PFLU_RS15945 at 3623.950 kb on + strand, within PFLU_RS15945 at 3623.951 kb on - strand, within PFLU_RS15945 at 3623.961 kb on - strand, within PFLU_RS15945 at 3624.061 kb on + strand, within PFLU_RS15945 at 3624.061 kb on + strand, within PFLU_RS15945 at 3624.062 kb on - strand, within PFLU_RS15945 at 3624.358 kb on + strand at 3624.359 kb on - strand at 3624.359 kb on - strand at 3624.359 kb on - strand at 3624.410 kb on - strand at 3624.410 kb on - strand at 3624.484 kb on + strand at 3624.490 kb on + strand at 3624.490 kb on + strand at 3624.617 kb on + strand, within PFLU_RS15950 at 3624.617 kb on + strand, within PFLU_RS15950 at 3624.617 kb on + strand, within PFLU_RS15950 at 3624.618 kb on - strand, within PFLU_RS15950 at 3624.618 kb on - strand, within PFLU_RS15950 at 3624.880 kb on - strand, within PFLU_RS15950 at 3625.076 kb on + strand, within PFLU_RS15950 at 3625.172 kb on + strand, within PFLU_RS15950 at 3625.172 kb on + strand, within PFLU_RS15950 at 3625.172 kb on + strand, within PFLU_RS15950 at 3625.173 kb on - strand, within PFLU_RS15950 at 3625.173 kb on - strand, within PFLU_RS15950 at 3625.249 kb on + strand at 3625.323 kb on + strand at 3625.324 kb on - strand at 3625.402 kb on + strand, within PFLU_RS15955
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxyphenylacetic 2 mM (C) remove 3,622,232 + PFLU_RS15935 0.46 -0.4 3,622,233 - PFLU_RS15935 0.46 -2.9 3,622,233 - PFLU_RS15935 0.46 -1.4 3,622,613 + -2.0 3,622,760 + -2.4 3,622,760 + -2.4 3,622,760 + -2.8 3,622,761 - -2.3 3,622,761 - -3.3 3,622,914 - PFLU_RS15940 0.45 -1.9 3,623,197 - -1.7 3,623,197 - -2.0 3,623,281 + -2.0 3,623,398 + PFLU_RS15945 0.17 -2.8 3,623,530 + PFLU_RS15945 0.27 -2.0 3,623,530 + PFLU_RS15945 0.27 -1.9 3,623,530 + PFLU_RS15945 0.27 -2.3 3,623,530 + PFLU_RS15945 0.27 -2.3 3,623,531 - PFLU_RS15945 0.27 -3.0 3,623,531 - PFLU_RS15945 0.27 -2.7 3,623,531 - PFLU_RS15945 0.27 -2.2 3,623,531 - PFLU_RS15945 0.27 -3.5 3,623,531 - PFLU_RS15945 0.27 -3.1 3,623,531 - PFLU_RS15945 0.27 -2.6 3,623,531 - PFLU_RS15945 0.27 -2.0 3,623,531 - PFLU_RS15945 0.27 -2.6 3,623,531 - PFLU_RS15945 0.27 -2.0 3,623,950 + PFLU_RS15945 0.59 -1.3 3,623,950 + PFLU_RS15945 0.59 -2.6 3,623,951 - PFLU_RS15945 0.59 -2.0 3,623,961 - PFLU_RS15945 0.60 -1.7 3,624,061 + PFLU_RS15945 0.67 -0.4 3,624,061 + PFLU_RS15945 0.67 -2.0 3,624,062 - PFLU_RS15945 0.67 -0.4 3,624,358 + -1.8 3,624,359 - -1.9 3,624,359 - -2.0 3,624,359 - -2.7 3,624,410 - -3.2 3,624,410 - -1.9 3,624,484 + +0.1 3,624,490 + -4.2 3,624,490 + +0.1 3,624,617 + PFLU_RS15950 0.15 -3.2 3,624,617 + PFLU_RS15950 0.15 +0.1 3,624,617 + PFLU_RS15950 0.15 -2.2 3,624,618 - PFLU_RS15950 0.15 -2.7 3,624,618 - PFLU_RS15950 0.15 -1.7 3,624,880 - PFLU_RS15950 0.47 -1.4 3,625,076 + PFLU_RS15950 0.72 -2.3 3,625,172 + PFLU_RS15950 0.84 -2.2 3,625,172 + PFLU_RS15950 0.84 -2.2 3,625,172 + PFLU_RS15950 0.84 -0.3 3,625,173 - PFLU_RS15950 0.84 -2.3 3,625,173 - PFLU_RS15950 0.84 -2.0 3,625,249 + -2.7 3,625,323 + -1.9 3,625,324 - -1.2 3,625,402 + PFLU_RS15955 0.10 -2.0
Or see this region's nucleotide sequence