Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11055

Experiment: 4-hydroxyphenylacetic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxyphenylacetic 2 mM (C)
2,440,468	+		PFLU_RS11050	0.56	+0.4
2,440,478	+		PFLU_RS11050	0.57	-1.0
2,440,478	+		PFLU_RS11050	0.57	-0.5
2,440,478	+		PFLU_RS11050	0.57	-0.3
2,440,478	+		PFLU_RS11050	0.57	-1.5
2,440,479	-		PFLU_RS11050	0.57	-0.1
2,440,479	-		PFLU_RS11050	0.57	-0.5
2,440,479	-		PFLU_RS11050	0.57	+0.1
2,440,517	-		PFLU_RS11050	0.60	+0.9
2,440,544	+		PFLU_RS11050	0.61	-2.0
2,440,544	+		PFLU_RS11050	0.61	-2.5
2,440,544	+		PFLU_RS11050	0.61	+0.3
2,440,544	+		PFLU_RS11050	0.61	-1.3
2,440,544	+		PFLU_RS11050	0.61	-0.9
2,440,545	-		PFLU_RS11050	0.61	+1.3
2,440,545	-		PFLU_RS11050	0.61	+0.3
2,440,545	-		PFLU_RS11050	0.61	-1.2
2,440,545	-		PFLU_RS11050	0.61	-0.6
2,440,545	-		PFLU_RS11050	0.61	-1.0
2,440,601	+		PFLU_RS11050	0.65	-3.4
2,440,671	+		PFLU_RS11050	0.69	-2.7
2,440,671	+		PFLU_RS11050	0.69	+0.3
2,440,671	+		PFLU_RS11050	0.69	-3.7
2,440,672	-		PFLU_RS11050	0.69	-1.3
2,440,672	-		PFLU_RS11050	0.69	+0.5
2,440,672	-		PFLU_RS11050	0.69	-0.7
2,440,672	-		PFLU_RS11050	0.69	-0.0
2,440,724	-		PFLU_RS11050	0.72	+0.0
2,440,735	+		PFLU_RS11050	0.73	+1.8
2,440,939	+		PFLU_RS11050	0.86	+1.3
2,440,939	+		PFLU_RS11050	0.86	+0.6
2,440,940	-		PFLU_RS11050	0.86	+2.5
2,440,940	-		PFLU_RS11050	0.86	-0.3
2,440,940	-		PFLU_RS11050	0.86	+1.8
2,440,940	-		PFLU_RS11050	0.86	-0.2
2,440,940	-		PFLU_RS11050	0.86	-0.1
2,440,963	+		PFLU_RS11050	0.87	-0.3
2,440,963	+		PFLU_RS11050	0.87	-1.5
2,440,964	-		PFLU_RS11050	0.87	-2.7
2,440,964	-		PFLU_RS11050	0.87	+3.4
2,440,984	+		PFLU_RS11050	0.89	+1.1
2,440,985	-		PFLU_RS11050	0.89	+0.5
2,441,057	-				-2.7
2,441,078	-				-1.3
2,441,083	+				-2.8
2,441,083	+				+0.1
2,441,083	+				+0.2
2,441,084	-				+0.3
2,441,084	-				-0.5
2,441,084	-				+1.0
2,441,084	-				-1.0
2,441,084	-				-0.7
2,441,084	-				+1.5
2,441,084	-				-0.3
2,441,106	+				+0.8
2,441,106	+				-1.9
2,441,107	-				+0.5
2,441,162	+				-0.6
2,441,162	+				-0.5
2,441,162	+				-1.9
2,441,162	+				+1.1
2,441,163	-				+1.3
2,441,163	-				-2.0
2,441,163	-				-1.5
2,441,163	-				-2.0
2,441,163	-				+0.1
2,441,163	-				-0.2
2,441,163	-				-1.5
2,441,163	-				-0.4
2,441,163	-				-0.9
2,441,172	-				-0.7
2,441,180	+				+0.3
2,441,188	+				-3.4
2,441,208	+				+0.5
2,441,208	+				-0.2
2,441,208	+				-1.3
2,441,208	+				-0.7
2,441,208	+				-0.2
2,441,208	+				-0.5
2,441,209	-				-0.7
2,441,209	-				+1.0
2,441,209	-				+2.5
2,441,211	+				+0.5
2,441,211	+				+0.3
2,441,212	-				+2.2
2,441,212	-				-2.4
2,441,226	-				-2.6
2,441,226	-				-0.6
2,441,252	+				+0.8
2,441,252	+				-1.5
2,441,252	+				-0.5
2,441,252	+				+1.3
2,441,253	-				-0.4
2,441,253	-				-0.3
2,441,253	-				-0.5
2,441,253	-				+1.3
2,441,253	-				+1.3
2,441,253	-				+2.0
2,441,253	-				-2.0
2,441,253	-				-1.7
2,441,253	-				-1.0
2,441,253	-				-0.1
2,441,293	+				-0.7
2,441,293	+				+1.7
2,441,294	-				+0.3
2,441,419	-				+0.8
2,441,465	-		PFLU_RS11055	0.18	-1.0
2,441,524	+		PFLU_RS11055	0.50	+0.4
2,441,525	-		PFLU_RS11055	0.51	-0.9
2,441,561	+		PFLU_RS11055	0.70	-0.9
2,441,561	+		PFLU_RS11055	0.70	-0.7
2,441,575	+		PFLU_RS11055	0.78	-3.2
2,441,576	-		PFLU_RS11055	0.79	-1.5
2,441,641	+				+0.3
2,441,641	+				+0.6
2,441,641	+				+1.2
2,441,641	+				-1.0
2,441,642	-				-1.0
2,441,642	-				+1.1
2,441,642	-				+0.5
2,441,642	-				-0.7
2,441,642	-				+1.3
2,441,642	-				+1.4
2,441,642	-				-1.0
2,441,642	-				+0.5
2,441,642	-				-0.0
2,441,666	+				-2.2
2,441,666	+				+1.5
2,441,666	+				-1.0
2,441,666	+				+1.0
2,441,666	+				-3.1
2,441,667	-				+0.3
2,441,667	-				-2.0
2,441,667	-				-0.6
2,441,698	+				-0.0
2,441,698	+				+0.5
2,441,699	-				-1.9
2,441,699	-				-0.3
2,441,702	+				-1.1
2,441,702	+				-0.7
2,441,746	-				-0.0
2,441,746	-				-2.8
2,441,746	-				+1.3
2,441,746	-				+0.7
2,441,750	+				-0.8
2,441,750	+				+0.5
2,441,751	-				-0.5
2,441,758	+				-0.0
2,441,758	+				-2.0
2,441,758	+				+0.7
2,441,758	+				+1.1
2,441,758	+				-1.0
2,441,759	-				-0.4
2,441,759	-				+0.8
2,441,759	-				+1.9
2,441,759	-				-1.3
2,441,761	-				-2.0
2,441,807	-				+0.4
2,441,807	-				-1.3
2,441,852	+				-0.6
2,441,853	-				-0.0
2,441,903	-				+0.1
2,441,905	+				-1.7
2,441,905	+				-2.2
2,441,941	+				-2.2
2,441,942	-				-0.7
2,441,942	-				-2.3
2,441,942	-				+0.0
2,441,973	-				-0.7
2,442,019	+				+0.8
2,442,020	-				-0.1
2,442,030	+				-1.3
2,442,030	+				+0.3
2,442,030	+				+1.0
2,442,031	-				-2.4
2,442,031	-				+0.3
2,442,053	+				-1.5
2,442,053	+				-1.9
2,442,054	-				+0.5
2,442,054	-				-1.1
2,442,072	+				+0.7
2,442,072	+				-0.3
2,442,072	+				+0.1
2,442,072	+				-0.7
2,442,072	+				+0.5
2,442,073	-				-0.3
2,442,073	-				+0.3
2,442,094	+				+1.3
2,442,094	+				-2.3
2,442,094	+				+1.3
2,442,095	-				+2.5
2,442,095	-				+0.4
2,442,095	-				-2.3
2,442,109	+				-0.2
2,442,109	+				+0.8
2,442,109	+				+1.2
2,442,109	+				+0.9
2,442,109	+				+0.7
2,442,110	-				-2.4
2,442,110	-				-0.3
2,442,163	+				+0.3
2,442,163	+				+0.5
2,442,163	+				-1.5
2,442,163	+				-1.5
2,442,163	+				-0.1
2,442,163	+				+0.1
2,442,164	-				-2.0
2,442,277	-				+0.4
2,442,287	+				+0.3
2,442,298	+				+0.3
2,442,298	+				+0.8
2,442,298	+				-0.5
2,442,298	+				+0.6
2,442,298	+				-0.0
2,442,299	-				-1.5
2,442,299	-				+1.3
2,442,321	+				+0.4
2,442,321	+				-1.0
2,442,322	-				+0.3
2,442,322	-				-1.5
2,442,322	-				+1.3
2,442,338	+				-0.9
2,442,338	+				+0.1
2,442,338	+				+0.5
2,442,339	-				-1.0
2,442,339	-				-1.5
2,442,339	-				-1.3
2,442,339	-				-0.3
2,442,351	+				+0.1
2,442,380	+				+0.8
2,442,380	+				-1.9
2,442,381	-				-2.4
2,442,381	-				+0.3
2,442,381	-				+0.8
2,442,381	-				-1.0
2,442,393	+				+1.3
2,442,394	-				+2.6
2,442,456	+				+0.3
2,442,544	-		PFLU_RS11060	0.21	-1.3