Experiment: DAC17_cps3_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0358 and BT0359 are separated by 32 nucleotides BT0359 and BT0360 are separated by 243 nucleotides BT0360 and BT0361 are separated by 34 nucleotides
BT0358: BT0358 - transposase (NCBI ptt file), at 430,495 to 431,388
BT0358
BT0359: BT0359 - hypothetical protein (NCBI ptt file), at 431,421 to 431,768
BT0359
BT0360: BT0360 - putative arabinan endo-1,5-alpha-L-arabinosidase (NCBI ptt file), at 432,012 to 433,937
BT0360
BT0361: BT0361 - hypothetical protein (NCBI ptt file), at 433,972 to 435,777
BT0361
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 431.808 kb on + strand at 431.808 kb on + strand at 431.840 kb on + strand at 431.872 kb on - strand at 431.873 kb on + strand at 432.003 kb on + strand at 432.014 kb on - strand at 432.035 kb on - strand at 432.071 kb on + strand at 432.204 kb on - strand at 432.385 kb on - strand, within BT0360 at 432.427 kb on - strand, within BT0360 at 432.455 kb on + strand, within BT0360 at 432.456 kb on - strand, within BT0360 at 432.457 kb on + strand, within BT0360 at 432.458 kb on - strand, within BT0360 at 432.518 kb on - strand, within BT0360 at 432.592 kb on - strand, within BT0360 at 432.598 kb on - strand, within BT0360 at 432.601 kb on - strand, within BT0360 at 432.639 kb on - strand, within BT0360 at 432.639 kb on - strand, within BT0360 at 432.639 kb on - strand, within BT0360 at 432.642 kb on - strand, within BT0360 at 432.665 kb on - strand, within BT0360 at 432.683 kb on - strand, within BT0360 at 432.697 kb on + strand, within BT0360 at 432.753 kb on + strand, within BT0360 at 432.875 kb on - strand, within BT0360 at 432.907 kb on - strand, within BT0360 at 432.911 kb on - strand, within BT0360 at 432.914 kb on + strand, within BT0360 at 432.915 kb on - strand, within BT0360 at 432.973 kb on + strand, within BT0360 at 433.032 kb on - strand, within BT0360 at 433.138 kb on + strand, within BT0360 at 433.166 kb on + strand, within BT0360 at 433.171 kb on + strand, within BT0360 at 433.406 kb on - strand, within BT0360 at 433.409 kb on + strand, within BT0360 at 433.516 kb on + strand, within BT0360 at 433.517 kb on - strand, within BT0360 at 433.637 kb on - strand, within BT0360 at 433.821 kb on - strand at 433.842 kb on + strand at 433.915 kb on + strand at 434.159 kb on + strand, within BT0361 at 434.224 kb on + strand, within BT0361 at 434.322 kb on + strand, within BT0361 at 434.331 kb on - strand, within BT0361 at 434.357 kb on - strand, within BT0361 at 434.369 kb on + strand, within BT0361 at 434.406 kb on - strand, within BT0361 at 434.549 kb on + strand, within BT0361 at 434.580 kb on - strand, within BT0361 at 434.585 kb on - strand, within BT0361 at 434.696 kb on + strand, within BT0361 at 434.876 kb on + strand, within BT0361 at 434.876 kb on + strand, within BT0361 at 434.876 kb on + strand at 434.928 kb on + strand, within BT0361 at 434.929 kb on - strand, within BT0361 at 434.933 kb on + strand, within BT0361 at 434.933 kb on + strand, within BT0361
Per-strain Table
Position Strand Gene LocusTag Fraction DAC17_cps3_0.1MOI remove 431,808 + +1.0 431,808 + -2.7 431,840 + -1.3 431,872 - +2.0 431,873 + -0.9 432,003 + +0.1 432,014 - +0.0 432,035 - -3.2 432,071 + -2.1 432,204 - -0.2 432,385 - BT0360 0.19 +0.6 432,427 - BT0360 0.22 -1.6 432,455 + BT0360 0.23 -0.2 432,456 - BT0360 0.23 -0.7 432,457 + BT0360 0.23 -1.8 432,458 - BT0360 0.23 -1.9 432,518 - BT0360 0.26 -1.0 432,592 - BT0360 0.30 +0.0 432,598 - BT0360 0.30 +0.0 432,601 - BT0360 0.31 -2.0 432,639 - BT0360 0.33 -1.0 432,639 - BT0360 0.33 +0.3 432,639 - BT0360 0.33 -2.3 432,642 - BT0360 0.33 -0.6 432,665 - BT0360 0.34 -1.3 432,683 - BT0360 0.35 -1.3 432,697 + BT0360 0.36 -2.2 432,753 + BT0360 0.38 +0.7 432,875 - BT0360 0.45 +0.0 432,907 - BT0360 0.46 -2.3 432,911 - BT0360 0.47 -3.5 432,914 + BT0360 0.47 +2.0 432,915 - BT0360 0.47 -1.1 432,973 + BT0360 0.50 +0.0 433,032 - BT0360 0.53 -0.2 433,138 + BT0360 0.58 -1.0 433,166 + BT0360 0.60 -3.2 433,171 + BT0360 0.60 -1.5 433,406 - BT0360 0.72 +1.6 433,409 + BT0360 0.73 +0.4 433,516 + BT0360 0.78 -1.1 433,517 - BT0360 0.78 -0.6 433,637 - BT0360 0.84 +0.4 433,821 - -1.3 433,842 + +0.5 433,915 + -1.0 434,159 + BT0361 0.10 -1.8 434,224 + BT0361 0.14 -1.3 434,322 + BT0361 0.19 -1.0 434,331 - BT0361 0.20 +2.2 434,357 - BT0361 0.21 -0.3 434,369 + BT0361 0.22 +0.4 434,406 - BT0361 0.24 +1.0 434,549 + BT0361 0.32 -0.1 434,580 - BT0361 0.34 -1.0 434,585 - BT0361 0.34 -0.3 434,696 + BT0361 0.40 -1.0 434,876 + BT0361 0.50 +0.4 434,876 + BT0361 0.50 -1.8 434,876 + +1.0 434,928 + BT0361 0.53 +0.4 434,929 - BT0361 0.53 -1.3 434,933 + BT0361 0.53 +1.2 434,933 + BT0361 0.53 -0.6
Or see this region's nucleotide sequence