Experiment: DAC16_cps7_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4089 and BT4090 are separated by 4 nucleotides BT4090 and BT4091 are separated by 152 nucleotides
BT4089: BT4089 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,337,214 to 5,339,010
BT4089
BT4090: BT4090 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,339,015 to 5,342,095
BT4090
BT4091: BT4091 - sialic acid-specific 9-O-acetylesterase (NCBI ptt file), at 5,342,248 to 5,344,236
BT4091
Position (kb) 5339
5340
5341
5342
5343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5338.080 kb on + strand, within BT4089 at 5338.157 kb on - strand, within BT4089 at 5338.162 kb on - strand, within BT4089 at 5338.162 kb on - strand, within BT4089 at 5338.171 kb on - strand, within BT4089 at 5338.190 kb on - strand, within BT4089 at 5338.209 kb on + strand, within BT4089 at 5338.210 kb on - strand, within BT4089 at 5338.215 kb on + strand, within BT4089 at 5338.216 kb on - strand, within BT4089 at 5338.239 kb on - strand, within BT4089 at 5338.272 kb on + strand, within BT4089 at 5338.341 kb on + strand, within BT4089 at 5338.342 kb on - strand, within BT4089 at 5338.346 kb on - strand, within BT4089 at 5338.347 kb on + strand, within BT4089 at 5338.353 kb on + strand, within BT4089 at 5338.435 kb on - strand, within BT4089 at 5338.443 kb on + strand, within BT4089 at 5338.464 kb on + strand, within BT4089 at 5338.487 kb on - strand, within BT4089 at 5338.502 kb on - strand, within BT4089 at 5338.502 kb on - strand, within BT4089 at 5338.504 kb on + strand, within BT4089 at 5338.506 kb on + strand, within BT4089 at 5338.507 kb on - strand, within BT4089 at 5338.507 kb on - strand, within BT4089 at 5338.513 kb on - strand, within BT4089 at 5338.604 kb on - strand, within BT4089 at 5338.652 kb on - strand, within BT4089 at 5338.652 kb on - strand, within BT4089 at 5338.652 kb on - strand, within BT4089 at 5338.660 kb on - strand, within BT4089 at 5338.947 kb on - strand at 5338.947 kb on - strand at 5338.963 kb on - strand at 5338.974 kb on + strand at 5339.037 kb on + strand at 5339.131 kb on - strand at 5339.150 kb on - strand at 5339.162 kb on - strand at 5339.193 kb on + strand at 5339.229 kb on - strand at 5339.240 kb on - strand at 5339.254 kb on + strand at 5339.284 kb on - strand at 5339.351 kb on - strand, within BT4090 at 5339.351 kb on - strand, within BT4090 at 5339.352 kb on + strand, within BT4090 at 5339.380 kb on - strand, within BT4090 at 5339.410 kb on + strand, within BT4090 at 5339.411 kb on - strand, within BT4090 at 5339.413 kb on + strand, within BT4090 at 5339.413 kb on + strand, within BT4090 at 5339.527 kb on + strand, within BT4090 at 5339.528 kb on - strand, within BT4090 at 5339.528 kb on - strand, within BT4090 at 5339.536 kb on + strand, within BT4090 at 5339.539 kb on + strand, within BT4090 at 5339.540 kb on - strand, within BT4090 at 5339.552 kb on - strand, within BT4090 at 5339.552 kb on - strand, within BT4090 at 5339.572 kb on + strand, within BT4090 at 5339.572 kb on + strand, within BT4090 at 5339.576 kb on + strand, within BT4090 at 5339.617 kb on + strand, within BT4090 at 5339.617 kb on + strand, within BT4090 at 5339.619 kb on + strand, within BT4090 at 5339.641 kb on + strand, within BT4090 at 5339.645 kb on - strand, within BT4090 at 5339.671 kb on + strand, within BT4090 at 5339.672 kb on - strand, within BT4090 at 5339.680 kb on - strand, within BT4090 at 5339.683 kb on - strand, within BT4090 at 5339.689 kb on - strand, within BT4090 at 5339.819 kb on - strand, within BT4090 at 5339.830 kb on + strand, within BT4090 at 5339.831 kb on - strand, within BT4090 at 5339.850 kb on - strand, within BT4090 at 5339.851 kb on + strand, within BT4090 at 5339.863 kb on + strand, within BT4090 at 5339.863 kb on + strand, within BT4090 at 5339.884 kb on + strand, within BT4090 at 5339.884 kb on + strand, within BT4090 at 5339.885 kb on - strand, within BT4090 at 5340.015 kb on - strand, within BT4090 at 5340.081 kb on - strand, within BT4090 at 5340.081 kb on - strand at 5340.194 kb on - strand, within BT4090 at 5340.194 kb on - strand, within BT4090 at 5340.201 kb on + strand, within BT4090 at 5340.216 kb on - strand, within BT4090 at 5340.282 kb on + strand, within BT4090 at 5340.285 kb on - strand, within BT4090 at 5340.340 kb on + strand, within BT4090 at 5340.346 kb on + strand, within BT4090 at 5340.349 kb on + strand, within BT4090 at 5340.362 kb on - strand, within BT4090 at 5340.438 kb on - strand, within BT4090 at 5340.438 kb on - strand, within BT4090 at 5340.459 kb on - strand, within BT4090 at 5340.491 kb on + strand, within BT4090 at 5340.492 kb on - strand, within BT4090 at 5340.497 kb on + strand, within BT4090 at 5340.519 kb on - strand, within BT4090 at 5340.519 kb on - strand, within BT4090 at 5340.520 kb on + strand, within BT4090 at 5340.524 kb on - strand, within BT4090 at 5340.542 kb on + strand, within BT4090 at 5340.543 kb on - strand, within BT4090 at 5340.575 kb on - strand, within BT4090 at 5340.575 kb on - strand, within BT4090 at 5340.580 kb on + strand, within BT4090 at 5340.621 kb on - strand, within BT4090 at 5340.747 kb on - strand, within BT4090 at 5340.749 kb on - strand, within BT4090 at 5340.749 kb on - strand, within BT4090 at 5340.749 kb on - strand, within BT4090 at 5340.749 kb on - strand, within BT4090 at 5340.752 kb on + strand, within BT4090 at 5340.753 kb on - strand, within BT4090 at 5340.761 kb on - strand, within BT4090 at 5340.788 kb on + strand, within BT4090 at 5340.789 kb on - strand, within BT4090 at 5340.791 kb on - strand, within BT4090 at 5340.818 kb on - strand, within BT4090 at 5340.849 kb on + strand, within BT4090 at 5340.850 kb on - strand, within BT4090 at 5340.916 kb on - strand, within BT4090 at 5340.994 kb on + strand, within BT4090 at 5340.995 kb on - strand, within BT4090 at 5341.042 kb on + strand, within BT4090 at 5341.066 kb on - strand, within BT4090 at 5341.081 kb on - strand, within BT4090 at 5341.105 kb on + strand, within BT4090 at 5341.116 kb on + strand, within BT4090 at 5341.121 kb on - strand, within BT4090 at 5341.135 kb on + strand, within BT4090 at 5341.169 kb on - strand, within BT4090 at 5341.185 kb on + strand, within BT4090 at 5341.186 kb on - strand, within BT4090 at 5341.186 kb on - strand, within BT4090 at 5341.213 kb on - strand, within BT4090 at 5341.215 kb on + strand, within BT4090 at 5341.215 kb on + strand, within BT4090 at 5341.216 kb on - strand, within BT4090 at 5341.219 kb on + strand, within BT4090 at 5341.253 kb on - strand, within BT4090 at 5341.301 kb on - strand, within BT4090 at 5341.380 kb on - strand, within BT4090 at 5341.428 kb on - strand, within BT4090 at 5341.445 kb on + strand, within BT4090 at 5341.561 kb on + strand, within BT4090 at 5341.562 kb on - strand, within BT4090 at 5341.585 kb on + strand, within BT4090 at 5341.609 kb on + strand, within BT4090 at 5341.687 kb on + strand, within BT4090 at 5341.687 kb on + strand, within BT4090 at 5341.822 kb on + strand at 5341.827 kb on + strand at 5341.828 kb on - strand at 5341.828 kb on - strand at 5341.832 kb on - strand at 5341.846 kb on + strand at 5341.846 kb on + strand at 5341.867 kb on + strand at 5341.877 kb on + strand at 5341.877 kb on + strand at 5341.878 kb on - strand at 5341.908 kb on - strand at 5341.929 kb on + strand at 5341.941 kb on + strand at 5341.978 kb on - strand at 5342.032 kb on + strand at 5342.033 kb on - strand at 5342.048 kb on + strand at 5342.048 kb on + strand at 5342.050 kb on + strand at 5342.065 kb on + strand at 5342.096 kb on + strand at 5342.097 kb on - strand at 5342.191 kb on - strand at 5342.193 kb on - strand at 5342.230 kb on + strand at 5342.245 kb on - strand at 5342.247 kb on + strand at 5342.286 kb on - strand at 5342.296 kb on - strand at 5342.341 kb on - strand at 5342.341 kb on - strand at 5342.341 kb on - strand at 5342.371 kb on - strand at 5342.386 kb on - strand at 5342.386 kb on - strand at 5342.439 kb on + strand at 5342.439 kb on + strand at 5342.440 kb on - strand at 5342.440 kb on - strand at 5342.505 kb on + strand, within BT4091 at 5342.549 kb on + strand, within BT4091 at 5342.603 kb on + strand, within BT4091 at 5342.664 kb on + strand, within BT4091 at 5342.679 kb on - strand, within BT4091 at 5342.718 kb on + strand, within BT4091 at 5342.752 kb on - strand, within BT4091 at 5342.766 kb on - strand, within BT4091 at 5342.811 kb on + strand, within BT4091 at 5342.812 kb on - strand, within BT4091 at 5342.845 kb on - strand, within BT4091 at 5342.866 kb on - strand, within BT4091 at 5343.067 kb on - strand, within BT4091
Per-strain Table
Position Strand Gene LocusTag Fraction DAC16_cps7_0.1MOI remove 5,338,080 + BT4089 0.48 -1.0 5,338,157 - BT4089 0.52 -0.9 5,338,162 - BT4089 0.53 +0.5 5,338,162 - BT4089 0.53 +0.4 5,338,171 - BT4089 0.53 -1.2 5,338,190 - BT4089 0.54 -1.9 5,338,209 + BT4089 0.55 -1.2 5,338,210 - BT4089 0.55 -0.6 5,338,215 + BT4089 0.56 -2.6 5,338,216 - BT4089 0.56 -0.6 5,338,239 - BT4089 0.57 -1.6 5,338,272 + BT4089 0.59 -2.0 5,338,341 + BT4089 0.63 +0.8 5,338,342 - BT4089 0.63 -2.0 5,338,346 - BT4089 0.63 -0.7 5,338,347 + BT4089 0.63 -1.8 5,338,353 + BT4089 0.63 -1.3 5,338,435 - BT4089 0.68 +0.6 5,338,443 + BT4089 0.68 +0.5 5,338,464 + BT4089 0.70 -0.2 5,338,487 - BT4089 0.71 -2.0 5,338,502 - BT4089 0.72 -0.4 5,338,502 - BT4089 0.72 -0.0 5,338,504 + BT4089 0.72 -0.6 5,338,506 + BT4089 0.72 -1.4 5,338,507 - BT4089 0.72 -0.4 5,338,507 - BT4089 0.72 +0.2 5,338,513 - BT4089 0.72 +0.3 5,338,604 - BT4089 0.77 +0.8 5,338,652 - BT4089 0.80 -0.4 5,338,652 - BT4089 0.80 -0.0 5,338,652 - BT4089 0.80 -1.0 5,338,660 - BT4089 0.80 -0.0 5,338,947 - -1.1 5,338,947 - -1.5 5,338,963 - -1.6 5,338,974 + -1.7 5,339,037 + -1.9 5,339,131 - -1.3 5,339,150 - -0.9 5,339,162 - -2.9 5,339,193 + +0.4 5,339,229 - -0.6 5,339,240 - -0.4 5,339,254 + -0.3 5,339,284 - -1.4 5,339,351 - BT4090 0.11 +1.3 5,339,351 - BT4090 0.11 -0.1 5,339,352 + BT4090 0.11 -0.4 5,339,380 - BT4090 0.12 -1.9 5,339,410 + BT4090 0.13 -0.6 5,339,411 - BT4090 0.13 -1.7 5,339,413 + BT4090 0.13 -1.3 5,339,413 + BT4090 0.13 -0.7 5,339,527 + BT4090 0.17 +1.0 5,339,528 - BT4090 0.17 +0.2 5,339,528 - BT4090 0.17 -2.4 5,339,536 + BT4090 0.17 +0.2 5,339,539 + BT4090 0.17 +2.0 5,339,540 - BT4090 0.17 -2.0 5,339,552 - BT4090 0.17 +1.0 5,339,552 - BT4090 0.17 -0.3 5,339,572 + BT4090 0.18 -1.6 5,339,572 + BT4090 0.18 -0.0 5,339,576 + BT4090 0.18 -0.0 5,339,617 + BT4090 0.20 -2.1 5,339,617 + BT4090 0.20 -1.6 5,339,619 + BT4090 0.20 -0.6 5,339,641 + BT4090 0.20 +0.7 5,339,645 - BT4090 0.20 -1.0 5,339,671 + BT4090 0.21 -0.5 5,339,672 - BT4090 0.21 -0.1 5,339,680 - BT4090 0.22 -2.3 5,339,683 - BT4090 0.22 -3.3 5,339,689 - BT4090 0.22 -1.0 5,339,819 - BT4090 0.26 -0.5 5,339,830 + BT4090 0.26 +3.0 5,339,831 - BT4090 0.26 -3.0 5,339,850 - BT4090 0.27 -1.1 5,339,851 + BT4090 0.27 -1.0 5,339,863 + BT4090 0.28 -0.6 5,339,863 + BT4090 0.28 -0.2 5,339,884 + BT4090 0.28 -0.9 5,339,884 + BT4090 0.28 -0.5 5,339,885 - BT4090 0.28 -1.3 5,340,015 - BT4090 0.32 +0.3 5,340,081 - BT4090 0.35 +0.4 5,340,081 - +1.4 5,340,194 - BT4090 0.38 -2.3 5,340,194 - BT4090 0.38 -2.7 5,340,201 + BT4090 0.38 +1.0 5,340,216 - BT4090 0.39 -0.6 5,340,282 + BT4090 0.41 -1.9 5,340,285 - BT4090 0.41 -0.6 5,340,340 + BT4090 0.43 -1.0 5,340,346 + BT4090 0.43 -0.0 5,340,349 + BT4090 0.43 -0.8 5,340,362 - BT4090 0.44 -1.3 5,340,438 - BT4090 0.46 +0.5 5,340,438 - BT4090 0.46 -0.2 5,340,459 - BT4090 0.47 +1.6 5,340,491 + BT4090 0.48 +1.6 5,340,492 - BT4090 0.48 -0.9 5,340,497 + BT4090 0.48 -2.0 5,340,519 - BT4090 0.49 -0.9 5,340,519 - BT4090 0.49 -0.7 5,340,520 + BT4090 0.49 -0.6 5,340,524 - BT4090 0.49 -1.1 5,340,542 + BT4090 0.50 -2.3 5,340,543 - BT4090 0.50 -2.4 5,340,575 - BT4090 0.51 -0.7 5,340,575 - BT4090 0.51 +0.3 5,340,580 + BT4090 0.51 -0.6 5,340,621 - BT4090 0.52 -0.3 5,340,747 - BT4090 0.56 -0.0 5,340,749 - BT4090 0.56 -1.2 5,340,749 - BT4090 0.56 -1.4 5,340,749 - BT4090 0.56 +0.9 5,340,749 - BT4090 0.56 -0.3 5,340,752 + BT4090 0.56 -0.1 5,340,753 - BT4090 0.56 -0.0 5,340,761 - BT4090 0.57 -0.6 5,340,788 + BT4090 0.58 +0.5 5,340,789 - BT4090 0.58 -0.6 5,340,791 - BT4090 0.58 +2.0 5,340,818 - BT4090 0.59 +1.4 5,340,849 + BT4090 0.60 -0.1 5,340,850 - BT4090 0.60 -0.7 5,340,916 - BT4090 0.62 +0.8 5,340,994 + BT4090 0.64 -1.6 5,340,995 - BT4090 0.64 +1.4 5,341,042 + BT4090 0.66 -0.7 5,341,066 - BT4090 0.67 -1.6 5,341,081 - BT4090 0.67 +1.8 5,341,105 + BT4090 0.68 -0.3 5,341,116 + BT4090 0.68 -0.0 5,341,121 - BT4090 0.68 -1.4 5,341,135 + BT4090 0.69 -0.7 5,341,169 - BT4090 0.70 -0.3 5,341,185 + BT4090 0.70 +0.7 5,341,186 - BT4090 0.70 -1.2 5,341,186 - BT4090 0.70 +1.0 5,341,213 - BT4090 0.71 -1.6 5,341,215 + BT4090 0.71 +0.7 5,341,215 + BT4090 0.71 -2.9 5,341,216 - BT4090 0.71 +0.2 5,341,219 + BT4090 0.72 -1.2 5,341,253 - BT4090 0.73 +0.4 5,341,301 - BT4090 0.74 -1.1 5,341,380 - BT4090 0.77 -0.3 5,341,428 - BT4090 0.78 -0.3 5,341,445 + BT4090 0.79 +0.0 5,341,561 + BT4090 0.83 -1.5 5,341,562 - BT4090 0.83 +1.3 5,341,585 + BT4090 0.83 -0.0 5,341,609 + BT4090 0.84 -1.1 5,341,687 + BT4090 0.87 -0.6 5,341,687 + BT4090 0.87 -0.9 5,341,822 + +1.0 5,341,827 + -0.6 5,341,828 - +0.6 5,341,828 - -1.2 5,341,832 - -1.2 5,341,846 + +0.7 5,341,846 + +1.0 5,341,867 + -1.0 5,341,877 + -1.7 5,341,877 + +2.0 5,341,878 - -0.8 5,341,908 - -1.0 5,341,929 + -2.4 5,341,941 + +0.3 5,341,978 - -0.0 5,342,032 + -0.6 5,342,033 - -0.6 5,342,048 + -0.8 5,342,048 + -0.6 5,342,050 + -2.0 5,342,065 + -0.4 5,342,096 + +0.9 5,342,097 - -0.8 5,342,191 - -0.6 5,342,193 - -0.4 5,342,230 + -1.1 5,342,245 - -1.9 5,342,247 + +0.3 5,342,286 - -2.3 5,342,296 - -1.8 5,342,341 - +1.4 5,342,341 - -0.5 5,342,341 - +1.1 5,342,371 - -0.3 5,342,386 - -0.4 5,342,386 - -1.5 5,342,439 + -1.1 5,342,439 + +0.7 5,342,440 - -1.0 5,342,440 - -2.1 5,342,505 + BT4091 0.13 +1.0 5,342,549 + BT4091 0.15 +0.4 5,342,603 + BT4091 0.18 -2.0 5,342,664 + BT4091 0.21 -1.6 5,342,679 - BT4091 0.22 -0.9 5,342,718 + BT4091 0.24 +1.3 5,342,752 - BT4091 0.25 +0.2 5,342,766 - BT4091 0.26 -0.6 5,342,811 + BT4091 0.28 +1.0 5,342,812 - BT4091 0.28 +0.6 5,342,845 - BT4091 0.30 +1.0 5,342,866 - BT4091 0.31 +0.3 5,343,067 - BT4091 0.41 +0.2
Or see this region's nucleotide sequence