Experiment: DAC16_cps7_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0668 and BT0669 are separated by 131 nucleotides BT0669 and BT0670 are separated by 26 nucleotides
BT0668: BT0668 - hypothetical protein (NCBI ptt file), at 822,417 to 824,366
BT0668
BT0669: BT0669 - putative cation efflux system protein (NCBI ptt file), at 824,498 to 825,586
BT0669
BT0670: BT0670 - putative cation efflux system (NCBI ptt file), at 825,613 to 828,720
BT0670
Position (kb) 824
825
826 Strain fitness (log2 ratio) -2
-1
0
1
2 at 823.499 kb on - strand, within BT0668 at 823.554 kb on - strand, within BT0668 at 823.560 kb on + strand, within BT0668 at 823.721 kb on - strand, within BT0668 at 823.723 kb on - strand, within BT0668 at 823.723 kb on - strand, within BT0668 at 823.764 kb on - strand, within BT0668 at 823.791 kb on + strand, within BT0668 at 823.792 kb on - strand, within BT0668 at 823.821 kb on + strand, within BT0668 at 823.863 kb on + strand, within BT0668 at 823.920 kb on + strand, within BT0668 at 823.921 kb on - strand, within BT0668 at 823.921 kb on - strand, within BT0668 at 824.001 kb on - strand, within BT0668 at 824.093 kb on - strand, within BT0668 at 824.121 kb on + strand, within BT0668 at 824.222 kb on + strand at 824.223 kb on - strand at 824.449 kb on - strand at 824.474 kb on - strand at 824.540 kb on - strand at 824.747 kb on - strand, within BT0669 at 824.827 kb on - strand, within BT0669 at 824.847 kb on + strand, within BT0669 at 824.949 kb on + strand, within BT0669 at 825.014 kb on - strand, within BT0669 at 825.014 kb on - strand, within BT0669 at 825.080 kb on - strand, within BT0669 at 825.098 kb on - strand, within BT0669 at 825.098 kb on - strand, within BT0669 at 825.101 kb on - strand, within BT0669 at 825.175 kb on + strand, within BT0669 at 825.195 kb on - strand, within BT0669 at 825.225 kb on + strand, within BT0669 at 825.283 kb on - strand at 825.403 kb on - strand, within BT0669 at 825.438 kb on - strand, within BT0669 at 825.526 kb on + strand at 825.593 kb on - strand at 825.613 kb on - strand at 825.691 kb on + strand at 825.730 kb on - strand at 825.741 kb on + strand at 825.765 kb on + strand at 825.843 kb on + strand at 825.896 kb on - strand at 825.942 kb on - strand, within BT0670 at 825.958 kb on + strand, within BT0670 at 826.024 kb on + strand, within BT0670 at 826.057 kb on + strand, within BT0670 at 826.057 kb on + strand, within BT0670 at 826.060 kb on - strand, within BT0670 at 826.309 kb on + strand, within BT0670 at 826.314 kb on + strand, within BT0670 at 826.314 kb on + strand, within BT0670 at 826.394 kb on + strand, within BT0670 at 826.421 kb on + strand, within BT0670 at 826.509 kb on + strand, within BT0670 at 826.553 kb on + strand, within BT0670
Per-strain Table
Position Strand Gene LocusTag Fraction DAC16_cps7_0.1MOI remove 823,499 - BT0668 0.55 +0.8 823,554 - BT0668 0.58 -1.2 823,560 + BT0668 0.59 +2.3 823,721 - BT0668 0.67 -2.0 823,723 - BT0668 0.67 +0.0 823,723 - BT0668 0.67 +0.2 823,764 - BT0668 0.69 -0.9 823,791 + BT0668 0.70 -0.7 823,792 - BT0668 0.71 +0.9 823,821 + BT0668 0.72 +0.3 823,863 + BT0668 0.74 -2.2 823,920 + BT0668 0.77 +0.0 823,921 - BT0668 0.77 +1.3 823,921 - BT0668 0.77 -0.4 824,001 - BT0668 0.81 +0.7 824,093 - BT0668 0.86 +0.8 824,121 + BT0668 0.87 +1.4 824,222 + -0.6 824,223 - -1.0 824,449 - +0.0 824,474 - -1.0 824,540 - -1.6 824,747 - BT0669 0.23 +1.0 824,827 - BT0669 0.30 -0.6 824,847 + BT0669 0.32 -1.3 824,949 + BT0669 0.41 -0.4 825,014 - BT0669 0.47 -1.0 825,014 - BT0669 0.47 -0.1 825,080 - BT0669 0.53 +0.4 825,098 - BT0669 0.55 +0.0 825,098 - BT0669 0.55 -1.4 825,101 - BT0669 0.55 +1.0 825,175 + BT0669 0.62 -0.6 825,195 - BT0669 0.64 +0.6 825,225 + BT0669 0.67 +1.0 825,283 - +0.0 825,403 - BT0669 0.83 +0.2 825,438 - BT0669 0.86 +0.3 825,526 + +0.0 825,593 - -0.6 825,613 - +0.0 825,691 + +0.2 825,730 - +1.4 825,741 + +1.6 825,765 + -0.8 825,843 + +0.4 825,896 - -1.1 825,942 - BT0670 0.11 +0.1 825,958 + BT0670 0.11 -1.0 826,024 + BT0670 0.13 -2.1 826,057 + BT0670 0.14 +1.6 826,057 + BT0670 0.14 -0.2 826,060 - BT0670 0.14 +0.0 826,309 + BT0670 0.22 -1.5 826,314 + BT0670 0.23 -0.3 826,314 + BT0670 0.23 +1.0 826,394 + BT0670 0.25 -1.8 826,421 + BT0670 0.26 +0.0 826,509 + BT0670 0.29 -1.0 826,553 + BT0670 0.30 -2.3
Or see this region's nucleotide sequence