Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28460

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
6,331,159	-				+1.2
6,331,159	-				-3.0
6,331,159	-				-1.7
6,331,187	-				+0.3
6,331,187	-				-0.8
6,331,244	-				-0.7
6,331,244	-				-0.1
6,331,244	-				+1.9
6,331,251	-				-0.9
6,331,251	-				+1.5
6,331,251	-				+0.9
6,331,255	-				-0.7
6,331,255	-				+1.3
6,331,255	-				+1.9
6,331,255	-				-2.2
6,331,255	-				+2.3
6,331,255	-				-1.0
6,331,280	-				-0.5
6,331,282	-				-2.0
6,331,282	-				+2.3
6,331,397	+				+1.9
6,331,398	-				-2.4
6,331,398	-				-0.4
6,331,411	-				-0.7
6,331,411	-				+0.8
6,331,411	-				-2.4
6,331,415	+				-0.9
6,331,415	+				+1.9
6,331,415	+				+0.1
6,331,415	+				+1.4
6,331,415	+				+0.9
6,331,415	+				+0.6
6,331,416	-				+0.1
6,331,416	-				-0.5
6,331,416	-				-0.3
6,331,416	-				-0.1
6,331,416	-				-2.5
6,331,416	-				-0.7
6,331,416	-				+1.5
6,331,416	-				+0.3
6,331,416	-				-0.8
6,331,439	+				+1.0
6,331,440	-				-2.0
6,331,440	-				+1.1
6,331,440	-				-0.4
6,331,486	+				-1.1
6,331,486	+				+0.5
6,331,647	+		PFLU_RS28460	0.13	-1.1
6,331,647	+		PFLU_RS28460	0.13	-2.3
6,331,647	+		PFLU_RS28460	0.13	-0.2
6,331,647	+		PFLU_RS28460	0.13	-1.1
6,331,647	+		PFLU_RS28460	0.13	+3.3
6,331,647	+		PFLU_RS28460	0.13	-0.2
6,331,647	+		PFLU_RS28460	0.13	+2.5
6,331,647	+		PFLU_RS28460	0.13	-2.0
6,331,648	-		PFLU_RS28460	0.13	-1.7
6,331,648	-		PFLU_RS28460	0.13	-0.1
6,331,648	-		PFLU_RS28460	0.13	+2.0
6,331,648	-		PFLU_RS28460	0.13	-2.7
6,331,665	+		PFLU_RS28460	0.14	+0.5
6,331,665	+		PFLU_RS28460	0.14	+2.1
6,331,665	+		PFLU_RS28460	0.14	-0.9
6,331,665	+		PFLU_RS28460	0.14	-2.8
6,331,666	-		PFLU_RS28460	0.14	+0.1
6,331,806	+		PFLU_RS28460	0.24	-1.6
6,331,806	+		PFLU_RS28460	0.24	-1.4
6,331,806	+		PFLU_RS28460	0.24	-1.9
6,331,806	+		PFLU_RS28460	0.24	-1.1
6,331,806	+		PFLU_RS28460	0.24	-0.3
6,331,806	+		PFLU_RS28460	0.24	-1.7
6,331,806	+		PFLU_RS28460	0.24	-0.9
6,331,806	+		PFLU_RS28460	0.24	+1.7
6,331,806	+		PFLU_RS28460	0.24	-0.9
6,331,806	+		PFLU_RS28460	0.24	-1.9
6,331,806	+		PFLU_RS28460	0.24	-2.3
6,331,806	+		PFLU_RS28460	0.24	-1.5
6,331,807	-		PFLU_RS28460	0.24	+4.1
6,331,807	-		PFLU_RS28460	0.24	-1.1
6,331,807	-		PFLU_RS28460	0.24	-1.3
6,331,807	-		PFLU_RS28460	0.24	+0.1
6,331,807	-		PFLU_RS28460	0.24	+0.9
6,331,807	-		PFLU_RS28460	0.24	-0.1
6,331,807	-		PFLU_RS28460	0.24	+0.8
6,331,807	-		PFLU_RS28460	0.24	-1.3
6,331,807	-		PFLU_RS28460	0.24	+1.6
6,331,807	-		PFLU_RS28460	0.24	-0.1
6,331,807	-		PFLU_RS28460	0.24	-3.2
6,331,815	+		PFLU_RS28460	0.25	+1.7
6,331,815	+		PFLU_RS28460	0.25	+0.4
6,331,815	+		PFLU_RS28460	0.25	+1.9
6,331,815	+		PFLU_RS28460	0.25	+2.2
6,331,816	-		PFLU_RS28460	0.25	-1.7
6,331,816	-		PFLU_RS28460	0.25	-0.2
6,331,816	-		PFLU_RS28460	0.25	-2.2
6,331,816	-		PFLU_RS28460	0.25	-0.4
6,331,818	+		PFLU_RS28460	0.25	-0.4
6,331,818	+		PFLU_RS28460	0.25	-0.7
6,331,818	+		PFLU_RS28460	0.25	-0.8
6,331,818	+		PFLU_RS28460	0.25	+0.6
6,331,818	+		PFLU_RS28460	0.25	+0.1
6,331,818	+		PFLU_RS28460	0.25	+0.7
6,331,818	+		PFLU_RS28460	0.25	-1.7
6,331,819	-		PFLU_RS28460	0.25	-2.7
6,331,819	-		PFLU_RS28460	0.25	-2.3
6,331,819	-		PFLU_RS28460	0.25	+1.8
6,331,819	-		PFLU_RS28460	0.25	-1.7
6,331,819	-		PFLU_RS28460	0.25	-2.9
6,331,977	+		PFLU_RS28460	0.37	-1.7
6,331,977	+		PFLU_RS28460	0.37	+0.5
6,331,978	-		PFLU_RS28460	0.37	-2.6
6,331,978	-		PFLU_RS28460	0.37	-0.7
6,331,978	-		PFLU_RS28460	0.37	-0.3
6,331,978	-		PFLU_RS28460	0.37	+0.6
6,331,978	-		PFLU_RS28460	0.37	-1.3
6,331,978	-		PFLU_RS28460	0.37	-1.1
6,331,978	-		PFLU_RS28460	0.37	-0.9
6,332,085	+		PFLU_RS28460	0.45	+0.1
6,332,086	-		PFLU_RS28460	0.45	+1.1
6,332,097	+		PFLU_RS28460	0.46	-1.2
6,332,097	+		PFLU_RS28460	0.46	-1.7
6,332,097	+		PFLU_RS28460	0.46	-1.1
6,332,097	+		PFLU_RS28460	0.46	+1.7
6,332,097	+		PFLU_RS28460	0.46	-1.7
6,332,097	+		PFLU_RS28460	0.46	-1.5
6,332,097	+		PFLU_RS28460	0.46	-0.7
6,332,097	+		PFLU_RS28460	0.46	-2.5
6,332,098	-		PFLU_RS28460	0.46	+1.7
6,332,098	-		PFLU_RS28460	0.46	-2.1
6,332,098	-		PFLU_RS28460	0.46	-2.4
6,332,098	-		PFLU_RS28460	0.46	-0.1
6,332,098	-		PFLU_RS28460	0.46	-2.2
6,332,101	+		PFLU_RS28460	0.46	-0.8
6,332,101	+		PFLU_RS28460	0.46	-2.4
6,332,101	+		PFLU_RS28460	0.46	-1.2
6,332,102	-		PFLU_RS28460	0.46	-2.2
6,332,102	-		PFLU_RS28460	0.46	-1.2
6,332,173	-		PFLU_RS28460	0.51	-2.7
6,332,200	+		PFLU_RS28460	0.53	+1.9
6,332,200	+		PFLU_RS28460	0.53	-2.2
6,332,200	+		PFLU_RS28460	0.53	-1.1
6,332,201	-		PFLU_RS28460	0.53	+0.2
6,332,201	-		PFLU_RS28460	0.53	-2.2
6,332,201	-		PFLU_RS28460	0.53	-2.5
6,332,201	-		PFLU_RS28460	0.53	-1.0
6,332,201	-		PFLU_RS28460	0.53	-0.1
6,332,201	-		PFLU_RS28460	0.53	-2.5
6,332,201	-		PFLU_RS28460	0.53	-2.8
6,332,201	-		PFLU_RS28460	0.53	-1.8
6,332,201	-		PFLU_RS28460	0.53	+0.7
6,332,302	+		PFLU_RS28460	0.61	-1.4
6,332,380	-		PFLU_RS28460	0.67	-1.7
6,332,390	+		PFLU_RS28460	0.67	-0.9
6,332,390	+		PFLU_RS28460	0.67	-0.2
6,332,390	+		PFLU_RS28460	0.67	-1.7
6,332,390	+		PFLU_RS28460	0.67	+0.3
6,332,390	+		PFLU_RS28460	0.67	-0.2
6,332,390	+		PFLU_RS28460	0.67	-0.2
6,332,390	+		PFLU_RS28460	0.67	-0.9
6,332,390	+		PFLU_RS28460	0.67	-1.1
6,332,391	-		PFLU_RS28460	0.67	-0.8
6,332,391	-		PFLU_RS28460	0.67	-1.0
6,332,391	-		PFLU_RS28460	0.67	-1.5
6,332,391	-		PFLU_RS28460	0.67	-1.4
6,332,391	-		PFLU_RS28460	0.67	-1.7
6,332,391	-		PFLU_RS28460	0.67	-0.8
6,332,391	-		PFLU_RS28460	0.67	-1.2
6,332,391	-		PFLU_RS28460	0.67	-1.4
6,332,391	-		PFLU_RS28460	0.67	-2.6
6,332,445	+		PFLU_RS28460	0.71	-0.1
6,332,445	+		PFLU_RS28460	0.71	+0.3
6,332,445	+		PFLU_RS28460	0.71	+0.2
6,332,445	+		PFLU_RS28460	0.71	-0.2
6,332,446	-		PFLU_RS28460	0.72	+1.2
6,332,446	-		PFLU_RS28460	0.72	+0.7
6,332,446	-		PFLU_RS28460	0.72	-0.8
6,332,446	-		PFLU_RS28460	0.72	-0.8
6,332,446	-		PFLU_RS28460	0.72	+0.1
6,332,446	-		PFLU_RS28460	0.72	+1.1
6,332,446	-		PFLU_RS28460	0.72	-1.8
6,332,446	-		PFLU_RS28460	0.72	-0.1
6,332,455	-		PFLU_RS28460	0.72	-2.2
6,332,455	-		PFLU_RS28460	0.72	-1.9
6,332,455	-		PFLU_RS28460	0.72	+0.3
6,332,455	-		PFLU_RS28460	0.72	+0.3
6,332,455	-		PFLU_RS28460	0.72	-2.2
6,332,456	+		PFLU_RS28460	0.72	-1.1
6,332,456	+		PFLU_RS28460	0.72	-0.7
6,332,457	-		PFLU_RS28460	0.72	-1.2
6,332,628	+		PFLU_RS28460	0.85	-0.9
6,332,628	+		PFLU_RS28460	0.85	-1.7
6,332,628	+		PFLU_RS28460	0.85	-2.0
6,332,629	-		PFLU_RS28460	0.85	-1.8
6,332,629	-		PFLU_RS28460	0.85	-2.3
6,332,769	+				+0.1
6,332,769	+				-1.1
6,332,769	+				-0.7
6,332,769	+				-2.1
6,332,770	-				-1.1
6,332,770	-				-2.3
6,332,770	-				+0.8
6,332,770	-				-1.5
6,332,899	+				-2.2
6,332,899	+				-0.4
6,332,899	+				-0.7
6,332,899	+				-1.0
6,332,900	-				-1.1
6,332,900	-				-2.1
6,332,900	-				-2.1
6,332,900	-				+1.3
6,332,900	-				-1.7
6,332,900	-				-0.4
6,333,134	+		PFLU_RS28465	0.21	-2.2
6,333,134	+		PFLU_RS28465	0.21	-0.9
6,333,135	-		PFLU_RS28465	0.21	-0.3
6,333,403	+		PFLU_RS28465	0.39	-3.4
6,333,403	+		PFLU_RS28465	0.39	-0.0
6,333,473	-		PFLU_RS28465	0.44	-0.2
6,333,553	+		PFLU_RS28465	0.49	+1.5
6,333,553	+		PFLU_RS28465	0.49	+0.3
6,333,553	+		PFLU_RS28465	0.49	-2.6
6,333,553	+		PFLU_RS28465	0.49	+1.6
6,333,553	+		PFLU_RS28465	0.49	+1.9
6,333,553	+		PFLU_RS28465	0.49	-1.5
6,333,553	+		PFLU_RS28465	0.49	-0.2
6,333,553	+		PFLU_RS28465	0.49	-1.9
6,333,553	+		PFLU_RS28465	0.49	+0.2
6,333,553	+		PFLU_RS28465	0.49	+0.5
6,333,554	-		PFLU_RS28465	0.49	-1.2
6,333,554	-		PFLU_RS28465	0.49	+0.5
6,333,554	-		PFLU_RS28465	0.49	-0.8
6,333,554	-		PFLU_RS28465	0.49	-2.0
6,333,554	-		PFLU_RS28465	0.49	-1.6
6,333,554	-		PFLU_RS28465	0.49	-1.4
6,333,554	-		PFLU_RS28465	0.49	+0.1
6,333,554	-		PFLU_RS28465	0.49	-0.7
6,333,554	-		PFLU_RS28465	0.49	-3.0
6,333,554	-		PFLU_RS28465	0.49	+0.2
6,333,776	-		PFLU_RS28465	0.64	-0.1
6,333,776	-		PFLU_RS28465	0.64	-3.3