Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22615

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
5,089,497	+		PFLU_RS22605	0.20	-1.2
5,089,497	+		PFLU_RS22605	0.20	-0.4
5,089,497	+		PFLU_RS22605	0.20	-0.4
5,089,497	+		PFLU_RS22605	0.20	+0.0
5,089,497	+		PFLU_RS22605	0.20	-0.7
5,089,497	+		PFLU_RS22605	0.20	-0.4
5,089,497	+		PFLU_RS22605	0.20	+1.6
5,089,497	+		PFLU_RS22605	0.20	+1.0
5,089,497	+		PFLU_RS22605	0.20	-1.6
5,089,497	+		PFLU_RS22605	0.20	+0.6
5,089,497	+		PFLU_RS22605	0.20	+3.6
5,089,497	+		PFLU_RS22605	0.20	-1.4
5,089,497	+		PFLU_RS22605	0.20	-0.4
5,089,497	+		PFLU_RS22605	0.20	-0.7
5,089,497	+		PFLU_RS22605	0.20	-2.2
5,089,498	-		PFLU_RS22605	0.20	-1.2
5,089,498	-		PFLU_RS22605	0.20	-1.1
5,089,498	-		PFLU_RS22605	0.20	-0.4
5,089,498	-		PFLU_RS22605	0.20	-0.9
5,089,498	-		PFLU_RS22605	0.20	-2.6
5,089,498	-		PFLU_RS22605	0.20	+0.1
5,089,498	-		PFLU_RS22605	0.20	-2.3
5,089,498	-		PFLU_RS22605	0.20	-1.2
5,089,645	+		PFLU_RS22605	0.38	+0.0
5,089,645	+		PFLU_RS22605	0.38	-0.7
5,089,645	+		PFLU_RS22605	0.38	+0.6
5,089,645	+		PFLU_RS22605	0.38	-0.4
5,089,646	-		PFLU_RS22605	0.38	-1.2
5,089,646	-		PFLU_RS22605	0.38	+0.2
5,089,695	+		PFLU_RS22605	0.44	+0.4
5,089,696	-		PFLU_RS22605	0.44	+1.6
5,089,772	+		PFLU_RS22605	0.53	-0.4
5,089,773	-		PFLU_RS22605	0.53	-2.2
5,089,803	+		PFLU_RS22605	0.57	+0.0
5,089,803	+		PFLU_RS22605	0.57	+0.0
5,089,803	+		PFLU_RS22605	0.57	+0.0
5,089,803	+		PFLU_RS22605	0.57	-0.4
5,089,804	-		PFLU_RS22605	0.57	+0.4
5,089,825	+		PFLU_RS22605	0.60	-0.9
5,089,825	+		PFLU_RS22605	0.60	+2.1
5,089,825	+		PFLU_RS22605	0.60	+0.6
5,089,826	-		PFLU_RS22605	0.60	+1.5
5,089,893	+		PFLU_RS22605	0.68	-0.7
5,089,925	+		PFLU_RS22605	0.72	-0.7
5,089,926	-		PFLU_RS22605	0.72	+4.2
5,089,949	+		PFLU_RS22605	0.75	-0.4
5,089,949	+		PFLU_RS22605	0.75	-0.5
5,089,949	+		PFLU_RS22605	0.75	+1.6
5,089,949	+		PFLU_RS22605	0.75	-0.6
5,089,949	+		PFLU_RS22605	0.75	-1.4
5,089,949	+		PFLU_RS22605	0.75	-1.6
5,089,950	-		PFLU_RS22605	0.75	+3.0
5,089,950	-		PFLU_RS22605	0.75	+2.3
5,089,950	-		PFLU_RS22605	0.75	+0.0
5,090,158	+				-1.7
5,090,172	+				+0.0
5,090,172	+				+1.0
5,090,173	-				-0.2
5,090,173	-				-0.7
5,090,196	+		PFLU_RS22610	0.14	-2.2
5,090,196	+		PFLU_RS22610	0.14	-0.6
5,090,196	+		PFLU_RS22610	0.14	-0.4
5,090,197	-		PFLU_RS22610	0.15	+1.8
5,090,197	-		PFLU_RS22610	0.15	+0.9
5,090,197	-		PFLU_RS22610	0.15	+1.5
5,090,197	-		PFLU_RS22610	0.15	+0.5
5,090,215	+		PFLU_RS22610	0.22	+3.0
5,090,215	+		PFLU_RS22610	0.22	-1.6
5,090,215	+		PFLU_RS22610	0.22	-0.7
5,090,215	+		PFLU_RS22610	0.22	+0.6
5,090,215	+		PFLU_RS22610	0.22	-0.4
5,090,216	-		PFLU_RS22610	0.22	+0.0
5,090,216	-		PFLU_RS22610	0.22	-0.4
5,090,406	+				+1.6
5,090,406	+				-1.2
5,090,406	+				-1.6
5,090,406	+				-0.4
5,090,407	-				+1.8
5,090,407	-				-0.5
5,090,407	-				-1.6
5,090,407	-				+2.6
5,090,428	+				-1.5
5,090,429	-				-0.2
5,090,429	-				+1.1
5,090,441	+				+1.9
5,090,442	-				-2.4
5,090,460	+				-1.4
5,090,460	+				+0.2
5,090,460	+				+0.6
5,090,460	+				-2.3
5,090,460	+				+0.4
5,090,460	+				-1.0
5,090,460	+				-1.4
5,090,460	+				+2.6
5,090,460	+				-0.5
5,090,460	+				+1.4
5,090,460	+				-0.7
5,090,460	+				-0.4
5,090,460	+				-1.7
5,090,460	+				+1.4
5,090,460	+				+1.1
5,090,460	+				-2.3
5,090,460	+				-1.4
5,090,460	+				+2.3
5,090,460	+				-1.0
5,090,460	+				+0.4
5,090,461	-				-0.7
5,090,461	-				+0.9
5,090,461	-				+0.3
5,090,461	-				-1.4
5,090,461	-				-0.3
5,090,461	-				-0.3
5,090,461	-				-1.2
5,090,461	-				+0.0
5,090,461	-				+1.8
5,090,461	-				+1.3
5,090,461	-				+1.6
5,090,461	-				-2.0
5,090,461	-				-1.6
5,090,461	-				-1.2
5,090,461	-				+0.5
5,090,461	-				+1.6
5,090,461	-				-0.1
5,090,472	+				-2.3
5,090,472	+				-2.7
5,090,472	+				-2.1
5,090,472	+				+1.6
5,090,472	+				-1.6
5,090,472	+				-0.1
5,090,472	+				-0.4
5,090,472	+				+1.0
5,090,472	+				-0.7
5,090,472	+				-1.9
5,090,472	+				-2.1
5,090,472	+				+1.7
5,090,472	+				+0.9
5,090,472	+				+1.6
5,090,473	-				+0.7
5,090,473	-				-1.9
5,090,473	-				+0.8
5,090,473	-				+0.5
5,090,473	-				+0.4
5,090,473	-				+0.2
5,090,473	-				-0.8
5,090,473	-				-1.2
5,090,473	-				-0.0
5,090,473	-				+0.9
5,090,485	+				+0.6
5,090,486	-				+1.8
5,090,486	-				+0.1
5,090,486	-				+1.2
5,090,610	+		PFLU_RS22615	0.12	+1.4
5,090,610	+		PFLU_RS22615	0.12	+0.6
5,090,610	+		PFLU_RS22615	0.12	-0.7
5,090,610	+		PFLU_RS22615	0.12	+1.7
5,090,610	+		PFLU_RS22615	0.12	-0.6
5,090,610	+		PFLU_RS22615	0.12	+2.4
5,090,610	+		PFLU_RS22615	0.12	+0.0
5,090,610	+		PFLU_RS22615	0.12	-1.6
5,090,611	-		PFLU_RS22615	0.12	-1.6
5,090,611	-		PFLU_RS22615	0.12	+1.0
5,090,611	-		PFLU_RS22615	0.12	-1.6
5,090,611	-		PFLU_RS22615	0.12	+0.0
5,090,611	-		PFLU_RS22615	0.12	-1.7
5,090,612	+		PFLU_RS22615	0.12	-2.7
5,090,674	+		PFLU_RS22615	0.18	-1.2
5,090,674	+		PFLU_RS22615	0.18	-0.1
5,090,674	+		PFLU_RS22615	0.18	-1.9
5,090,675	-		PFLU_RS22615	0.18	-2.0
5,090,675	-		PFLU_RS22615	0.18	-0.9
5,090,675	-		PFLU_RS22615	0.18	+0.0
5,090,675	-		PFLU_RS22615	0.18	+0.3
5,090,675	-		PFLU_RS22615	0.18	-3.0
5,090,694	+		PFLU_RS22615	0.20	-1.0
5,090,694	+		PFLU_RS22615	0.20	-1.0
5,090,694	+		PFLU_RS22615	0.20	+1.6
5,090,694	+		PFLU_RS22615	0.20	-1.6
5,090,695	-		PFLU_RS22615	0.20	-1.4
5,090,767	+		PFLU_RS22615	0.28	-0.4
5,090,800	+		PFLU_RS22615	0.31	-1.2
5,090,800	+		PFLU_RS22615	0.31	-0.7
5,090,801	-		PFLU_RS22615	0.31	-0.6
5,090,801	-		PFLU_RS22615	0.31	-1.0
5,090,801	-		PFLU_RS22615	0.31	+1.0
5,090,936	+		PFLU_RS22615	0.44	+3.2
5,090,936	+		PFLU_RS22615	0.44	+1.6
5,090,936	+		PFLU_RS22615	0.44	+0.1
5,090,937	-		PFLU_RS22615	0.45	+0.0
5,090,937	-		PFLU_RS22615	0.45	-0.7
5,091,014	+		PFLU_RS22615	0.52	+0.5
5,091,014	+		PFLU_RS22615	0.52	+1.4
5,091,014	+		PFLU_RS22615	0.52	-1.9
5,091,014	+		PFLU_RS22615	0.52	-0.4
5,091,015	-		PFLU_RS22615	0.52	-1.1
5,091,015	-		PFLU_RS22615	0.52	+0.8
5,091,025	+		PFLU_RS22615	0.53	-0.9
5,091,025	+		PFLU_RS22615	0.53	-2.7
5,091,025	+		PFLU_RS22615	0.53	+0.0
5,091,026	-		PFLU_RS22615	0.54	-0.3
5,091,026	-		PFLU_RS22615	0.54	-3.1
5,091,026	-		PFLU_RS22615	0.54	+1.6
5,091,035	+		PFLU_RS22615	0.54	-0.4
5,091,035	+		PFLU_RS22615	0.54	+0.8
5,091,035	+		PFLU_RS22615	0.54	+2.4
5,091,035	+		PFLU_RS22615	0.54	+2.4
5,091,035	+		PFLU_RS22615	0.54	-2.4
5,091,036	-		PFLU_RS22615	0.55	-0.5
5,091,036	-		PFLU_RS22615	0.55	-0.4
5,091,036	-		PFLU_RS22615	0.55	+0.5
5,091,037	+		PFLU_RS22615	0.55	+0.3
5,091,037	+		PFLU_RS22615	0.55	-1.3
5,091,037	+		PFLU_RS22615	0.55	+1.4
5,091,037	+		PFLU_RS22615	0.55	-0.4
5,091,037	+		PFLU_RS22615	0.55	-0.7
5,091,037	+		PFLU_RS22615	0.55	+0.6
5,091,037	+		PFLU_RS22615	0.55	-0.4
5,091,037	+		PFLU_RS22615	0.55	+0.6
5,091,037	+		PFLU_RS22615	0.55	-0.7
5,091,037	+		PFLU_RS22615	0.55	-1.0
5,091,037	+		PFLU_RS22615	0.55	+2.4
5,091,037	+		PFLU_RS22615	0.55	-1.1
5,091,037	+		PFLU_RS22615	0.55	+1.5
5,091,037	+		PFLU_RS22615	0.55	+1.9
5,091,037	+		PFLU_RS22615	0.55	-2.4
5,091,037	+		PFLU_RS22615	0.55	+1.6
5,091,037	+		PFLU_RS22615	0.55	-2.1
5,091,037	+		PFLU_RS22615	0.55	-0.3
5,091,037	+		PFLU_RS22615	0.55	+0.4
5,091,037	+		PFLU_RS22615	0.55	+0.0
5,091,037	+		PFLU_RS22615	0.55	-0.4
5,091,037	+		PFLU_RS22615	0.55	+0.8
5,091,037	+		PFLU_RS22615	0.55	-1.6
5,091,037	+		PFLU_RS22615	0.55	+0.6
5,091,038	-		PFLU_RS22615	0.55	-0.7
5,091,038	-		PFLU_RS22615	0.55	+0.1
5,091,038	-		PFLU_RS22615	0.55	-1.4
5,091,038	-		PFLU_RS22615	0.55	-1.6
5,091,038	-		PFLU_RS22615	0.55	-2.8
5,091,038	-		PFLU_RS22615	0.55	+0.2
5,091,038	-		PFLU_RS22615	0.55	-1.2
5,091,038	-		PFLU_RS22615	0.55	+0.0
5,091,038	-		PFLU_RS22615	0.55	-1.1
5,091,038	-		PFLU_RS22615	0.55	+1.3
5,091,038	-		PFLU_RS22615	0.55	+2.0
5,091,038	-		PFLU_RS22615	0.55	+2.1
5,091,038	-		PFLU_RS22615	0.55	-1.0
5,091,038	-		PFLU_RS22615	0.55	-1.2
5,091,038	-		PFLU_RS22615	0.55	+1.8
5,091,038	-		PFLU_RS22615	0.55	+0.4
5,091,038	-		PFLU_RS22615	0.55	-2.5
5,091,038	-		PFLU_RS22615	0.55	-3.2
5,091,038	-		PFLU_RS22615	0.55	-2.4
5,091,038	-		PFLU_RS22615	0.55	+0.4
5,091,038	-		PFLU_RS22615	0.55	-0.7
5,091,044	+		PFLU_RS22615	0.55	-0.9
5,091,158	+		PFLU_RS22615	0.67	-0.7
5,091,159	-		PFLU_RS22615	0.67	+0.0
5,091,314	+		PFLU_RS22615	0.82	-2.1
5,091,314	+		PFLU_RS22615	0.82	+1.2
5,091,315	-		PFLU_RS22615	0.83	-0.2
5,091,315	-		PFLU_RS22615	0.83	-0.1
5,091,432	-				-1.1
5,091,514	+				-0.7
5,091,514	+				+0.4
5,091,514	+				-1.3
5,091,515	-				-2.9
5,091,515	-				-0.9
5,091,515	-				+0.5
5,091,568	+		PFLU_RS22620	0.11	-1.1
5,091,568	+		PFLU_RS22620	0.11	+0.1
5,091,568	+		PFLU_RS22620	0.11	+0.6
5,091,568	+		PFLU_RS22620	0.11	-0.4
5,091,568	+		PFLU_RS22620	0.11	+1.6
5,091,568	+		PFLU_RS22620	0.11	-1.9
5,091,568	+		PFLU_RS22620	0.11	+0.1
5,091,568	+		PFLU_RS22620	0.11	-2.9
5,091,569	-		PFLU_RS22620	0.11	+0.6
5,091,569	-		PFLU_RS22620	0.11	+0.6
5,091,569	-		PFLU_RS22620	0.11	-1.4
5,091,569	-		PFLU_RS22620	0.11	+0.6
5,091,569	-		PFLU_RS22620	0.11	-2.8
5,091,569	-		PFLU_RS22620	0.11	-1.6
5,091,574	+		PFLU_RS22620	0.12	+0.6
5,091,574	+		PFLU_RS22620	0.12	+0.6
5,091,574	+		PFLU_RS22620	0.12	-0.2
5,091,574	+		PFLU_RS22620	0.12	-1.9
5,091,574	+		PFLU_RS22620	0.12	-0.9
5,091,574	+		PFLU_RS22620	0.12	-0.4
5,091,574	+		PFLU_RS22620	0.12	-2.5
5,091,574	+		PFLU_RS22620	0.12	-3.1
5,091,574	+		PFLU_RS22620	0.12	+1.2
5,091,574	+		PFLU_RS22620	0.12	-0.9
5,091,574	+		PFLU_RS22620	0.12	-0.4
5,091,574	+		PFLU_RS22620	0.12	-0.6
5,091,574	+		PFLU_RS22620	0.12	+0.6
5,091,574	+		PFLU_RS22620	0.12	+0.3
5,091,574	+		PFLU_RS22620	0.12	-0.4
5,091,574	+		PFLU_RS22620	0.12	-1.4
5,091,574	+		PFLU_RS22620	0.12	-1.4
5,091,574	+		PFLU_RS22620	0.12	-1.6
5,091,574	+		PFLU_RS22620	0.12	-0.0
5,091,575	-		PFLU_RS22620	0.13	+1.1
5,091,575	-		PFLU_RS22620	0.13	+0.3
5,091,575	-		PFLU_RS22620	0.13	-1.0
5,091,575	-		PFLU_RS22620	0.13	-1.0
5,091,575	-		PFLU_RS22620	0.13	-1.3
5,091,575	-		PFLU_RS22620	0.13	-1.4
5,091,575	-		PFLU_RS22620	0.13	-1.5
5,091,575	-		PFLU_RS22620	0.13	+0.3
5,091,575	-		PFLU_RS22620	0.13	-0.3
5,091,575	-		PFLU_RS22620	0.13	-0.0
5,091,575	-		PFLU_RS22620	0.13	-1.0
5,091,575	-		PFLU_RS22620	0.13	-0.5
5,091,575	-		PFLU_RS22620	0.13	+0.0
5,091,575	-		PFLU_RS22620	0.13	-0.8
5,091,575	-		PFLU_RS22620	0.13	+0.8
5,091,575	-		PFLU_RS22620	0.13	-2.3
5,091,575	-		PFLU_RS22620	0.13	-3.1
5,091,725	-		PFLU_RS22620	0.43	-0.8
5,091,725	-		PFLU_RS22620	0.43	+1.2
5,091,725	-		PFLU_RS22620	0.43	-0.9
5,091,725	-		PFLU_RS22620	0.43	-1.6
5,091,869	+		PFLU_RS22620	0.72	-1.1
5,091,869	+		PFLU_RS22620	0.72	-1.7
5,091,869	+		PFLU_RS22620	0.72	-2.2
5,091,869	+		PFLU_RS22620	0.72	-1.0
5,091,870	-		PFLU_RS22620	0.73	-0.9
5,091,870	-		PFLU_RS22620	0.73	+1.3
5,091,870	-		PFLU_RS22620	0.73	-2.0
5,091,870	-		PFLU_RS22620	0.73	-0.9
5,091,994	+				-2.3
5,091,994	+				+1.5
5,091,994	+				-0.7
5,091,995	-				-0.8
5,091,995	-				-1.5
5,091,995	-				-1.9
5,092,116	+				-2.2
5,092,132	+				+1.2
5,092,142	+				-1.0
5,092,142	+				-1.0
5,092,142	+				-0.4
5,092,142	+				-1.6
5,092,142	+				-2.9
5,092,142	+				+0.4
5,092,143	-				+0.1
5,092,143	-				-0.7
5,092,143	-				+0.3
5,092,220	+				-0.4
5,092,220	+				-2.7
5,092,220	+				-0.4
5,092,221	-				-0.0
5,092,221	-				-0.8
5,092,331	-		PFLU_RS22625	0.14	+3.3
5,092,359	+		PFLU_RS22625	0.17	-0.5
5,092,359	+		PFLU_RS22625	0.17	+1.0
5,092,360	-		PFLU_RS22625	0.17	+0.0
5,092,360	-		PFLU_RS22625	0.17	+2.0
5,092,360	-		PFLU_RS22625	0.17	-0.6
5,092,360	-		PFLU_RS22625	0.17	-0.2
5,092,360	-		PFLU_RS22625	0.17	+0.0
5,092,360	-		PFLU_RS22625	0.17	+0.3