Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19950

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
4,512,231	+				+0.2
4,512,231	+				-1.8
4,512,232	-				+2.0
4,512,232	-				-2.5
4,512,232	-				-2.5
4,512,240	-				-0.6
4,512,310	-				-0.0
4,512,310	-				-2.2
4,512,310	-				-0.2
4,512,648	+				-1.2
4,512,648	+				-1.4
4,512,666	-				-2.9
4,512,666	-				+0.8
4,512,679	+				+1.3
4,512,716	-				-3.1
4,512,770	+				-0.2
4,512,771	-				-2.7
4,512,830	+				+1.7
4,512,831	-				-0.1
4,512,909	-				+1.0
4,512,925	+				-1.2
4,512,929	+				+2.4
4,512,939	-				-2.0
4,513,006	+				+1.2
4,513,006	+				+1.3
4,513,007	-				-2.1
4,513,007	-				-0.6
4,513,097	+				-1.1
4,513,098	-				+0.2
4,513,098	-				-2.3
4,513,098	-				+2.0
4,513,098	-				+0.3
4,513,198	+				+1.4
4,513,263	+				+1.7
4,513,264	-				+0.2
4,513,264	-				+0.8
4,513,264	-				+1.0
4,513,264	-				+1.9
4,513,308	+				-1.0
4,513,356	+				-0.9
4,513,390	-		PFLU_RS19950	0.11	+2.4
4,513,461	+		PFLU_RS19950	0.13	-0.2
4,513,461	+		PFLU_RS19950	0.13	-1.9
4,513,462	-		PFLU_RS19950	0.13	+3.6
4,513,462	-		PFLU_RS19950	0.13	+0.4
4,513,482	+		PFLU_RS19950	0.14	+1.9
4,513,527	+		PFLU_RS19950	0.16	-1.4
4,513,528	-		PFLU_RS19950	0.16	+0.0
4,513,548	+		PFLU_RS19950	0.17	+0.4
4,513,548	+		PFLU_RS19950	0.17	+2.9
4,513,548	+		PFLU_RS19950	0.17	+2.7
4,513,548	+		PFLU_RS19950	0.17	+1.1
4,513,548	+		PFLU_RS19950	0.17	+2.8
4,513,549	-		PFLU_RS19950	0.17	-0.2
4,513,549	-		PFLU_RS19950	0.17	+1.1
4,513,878	+		PFLU_RS19950	0.29	+2.9
4,513,879	-		PFLU_RS19950	0.29	+0.8
4,513,879	-		PFLU_RS19950	0.29	+0.0
4,513,879	-		PFLU_RS19950	0.29	+2.2
4,513,942	-		PFLU_RS19950	0.31	+3.0
4,514,040	+		PFLU_RS19950	0.34	+2.5
4,514,040	+		PFLU_RS19950	0.34	+1.1
4,514,040	+		PFLU_RS19950	0.34	-1.2
4,514,040	+		PFLU_RS19950	0.34	+1.4
4,514,040	+		PFLU_RS19950	0.34	+1.6
4,514,040	+		PFLU_RS19950	0.34	-1.1
4,514,040	+		PFLU_RS19950	0.34	+0.4
4,514,041	-		PFLU_RS19950	0.34	-0.9
4,514,041	-		PFLU_RS19950	0.34	+0.6
4,514,041	-		PFLU_RS19950	0.34	-0.7
4,514,041	-		PFLU_RS19950	0.34	-2.5
4,514,041	-		PFLU_RS19950	0.34	-1.7
4,514,047	-		PFLU_RS19950	0.35	-2.5
4,514,047	-		PFLU_RS19950	0.35	-0.8
4,514,047	-		PFLU_RS19950	0.35	-1.6
4,514,223	+		PFLU_RS19950	0.41	-2.8
4,514,223	+		PFLU_RS19950	0.41	+1.6
4,514,224	-		PFLU_RS19950	0.41	-1.3
4,514,224	-		PFLU_RS19950	0.41	+2.0
4,514,271	+		PFLU_RS19950	0.43	-1.8
4,514,271	+		PFLU_RS19950	0.43	+1.3
4,514,271	+		PFLU_RS19950	0.43	-0.5
4,514,271	+		PFLU_RS19950	0.43	+1.0
4,514,271	+		PFLU_RS19950	0.43	+0.2
4,514,271	+		PFLU_RS19950	0.43	+2.6
4,514,271	+		PFLU_RS19950	0.43	-0.9
4,514,272	-		PFLU_RS19950	0.43	+0.6
4,514,272	-		PFLU_RS19950	0.43	-0.6
4,514,272	-		PFLU_RS19950	0.43	-0.7
4,514,272	-		PFLU_RS19950	0.43	-0.9
4,514,272	-		PFLU_RS19950	0.43	+3.3
4,514,272	-		PFLU_RS19950	0.43	-0.6
4,514,272	-		PFLU_RS19950	0.43	-0.6
4,514,272	-		PFLU_RS19950	0.43	+0.1
4,514,272	-		PFLU_RS19950	0.43	-0.4
4,514,614	-		PFLU_RS19950	0.55	+0.4
4,514,746	-		PFLU_RS19950	0.60	-1.0
4,514,763	+		PFLU_RS19950	0.61	+2.0
4,514,763	+		PFLU_RS19950	0.61	+3.0
4,514,764	-		PFLU_RS19950	0.61	-1.8
4,514,764	-		PFLU_RS19950	0.61	+2.3
4,514,880	+		PFLU_RS19950	0.65	+1.6
4,514,880	+		PFLU_RS19950	0.65	-1.3
4,514,881	-		PFLU_RS19950	0.65	+1.3
4,515,048	+		PFLU_RS19950	0.71	-0.5
4,515,049	-		PFLU_RS19950	0.71	-0.6
4,515,049	-		PFLU_RS19950	0.71	-2.2
4,515,159	+		PFLU_RS19950	0.75	+2.2
4,515,159	+		PFLU_RS19950	0.75	-2.2
4,515,160	-		PFLU_RS19950	0.75	+0.2
4,515,210	+		PFLU_RS19950	0.77	-1.8
4,515,211	-		PFLU_RS19950	0.77	+1.4
4,515,211	-		PFLU_RS19950	0.77	-2.8
4,515,211	-		PFLU_RS19950	0.77	+0.9
4,515,211	-		PFLU_RS19950	0.77	-0.6
4,515,211	-		PFLU_RS19950	0.77	-2.6
4,515,270	+		PFLU_RS19950	0.79	+0.4
4,515,270	+		PFLU_RS19950	0.79	-0.6
4,515,271	-		PFLU_RS19950	0.79	-0.9
4,515,294	+		PFLU_RS19950	0.80	+0.2
4,515,294	+		PFLU_RS19950	0.80	+1.4
4,515,294	+		PFLU_RS19950	0.80	+1.6
4,515,295	-		PFLU_RS19950	0.80	+2.2
4,515,310	-		PFLU_RS19950	0.81	+0.8
4,515,420	+		PFLU_RS19950	0.85	+0.2
4,515,420	+		PFLU_RS19950	0.85	-2.1
4,515,420	+		PFLU_RS19950	0.85	+0.9
4,515,420	+		PFLU_RS19950	0.85	-2.5
4,515,421	-		PFLU_RS19950	0.85	-0.6
4,515,421	-		PFLU_RS19950	0.85	+0.6
4,515,421	-		PFLU_RS19950	0.85	+0.1
4,515,421	-		PFLU_RS19950	0.85	-0.4
4,515,421	-		PFLU_RS19950	0.85	+3.2
4,515,474	+		PFLU_RS19950	0.87	-0.9
4,515,474	+		PFLU_RS19950	0.87	-2.7
4,515,546	+		PFLU_RS19950	0.89	+1.2
4,515,547	-		PFLU_RS19950	0.89	+1.0
4,515,547	-		PFLU_RS19950	0.89	+0.4
4,515,549	+		PFLU_RS19950	0.89	-0.3
4,515,549	+		PFLU_RS19950	0.89	-0.2
4,515,550	-		PFLU_RS19950	0.89	-0.8
4,515,550	-		PFLU_RS19950	0.89	-0.6
4,515,550	-		PFLU_RS19950	0.89	+0.4
4,515,795	+				+2.4
4,515,795	+				+0.4
4,515,795	+				+0.4
4,515,795	+				-2.3
4,515,796	-				-0.8
4,515,796	-				+1.7
4,515,856	+				-1.5
4,515,856	+				-0.4
4,515,857	-				-1.8
4,515,857	-				-0.6
4,515,954	+				-1.9
4,515,954	+				-0.0
4,515,954	+				-0.8
4,515,954	+				-1.2
4,515,955	-				-0.1
4,515,955	-				+0.9
4,515,955	-				+2.2
4,515,955	-				+0.4
4,515,955	-				+0.4
4,516,198	+		PFLU_RS19955	0.46	-1.4
4,516,198	+		PFLU_RS19955	0.46	+0.7
4,516,198	+		PFLU_RS19955	0.46	+0.1
4,516,199	-		PFLU_RS19955	0.46	+0.1
4,516,346	+		PFLU_RS19955	0.70	+1.4
4,516,435	-		PFLU_RS19955	0.84	-1.1
4,516,534	+				+0.8
4,516,535	-				-3.5
4,516,591	+				-0.5
4,516,591	+				+2.8
4,516,592	-				+2.8
4,516,592	-				+0.3
4,516,648	+				+2.6
4,516,648	+				-1.6
4,516,649	-				-1.0
4,516,649	-				-0.1
4,516,649	-				+1.1
4,516,734	+		PFLU_RS19960	0.13	+3.4