Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06900

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
1,543,151	+		PFLU_RS06895	0.50	+1.1
1,543,186	+		PFLU_RS06895	0.53	-1.1
1,543,257	+		PFLU_RS06895	0.59	+1.1
1,543,257	+		PFLU_RS06895	0.59	-2.1
1,543,257	+		PFLU_RS06895	0.59	+1.2
1,543,258	-		PFLU_RS06895	0.59	-2.1
1,543,258	-		PFLU_RS06895	0.59	-0.5
1,543,258	-		PFLU_RS06895	0.59	+1.6
1,543,258	-		PFLU_RS06895	0.59	-1.0
1,543,258	-		PFLU_RS06895	0.59	+0.9
1,543,258	-		PFLU_RS06895	0.59	+2.4
1,543,258	-		PFLU_RS06895	0.59	+1.6
1,543,258	-		PFLU_RS06895	0.59	-0.8
1,543,277	-		PFLU_RS06895	0.60	+1.8
1,543,402	+		PFLU_RS06895	0.71	+4.6
1,543,402	+		PFLU_RS06895	0.71	-0.1
1,543,403	-		PFLU_RS06895	0.71	-1.4
1,543,444	+		PFLU_RS06895	0.75	-0.1
1,543,444	+		PFLU_RS06895	0.75	+0.0
1,543,445	-		PFLU_RS06895	0.75	-2.2
1,543,732	+				-3.5
1,543,732	+				+0.2
1,543,735	+				+0.6
1,543,736	-				-0.0
1,543,811	+				+0.2
1,543,811	+				+1.1
1,543,811	+				+0.2
1,543,811	+				-1.5
1,543,811	+				-0.2
1,543,811	+				-1.2
1,543,811	+				+1.5
1,543,811	+				-0.2
1,543,811	+				+1.0
1,543,812	-				+0.6
1,543,812	-				+1.0
1,543,812	-				-1.1
1,543,812	-				-1.8
1,543,812	-				+2.1
1,543,812	-				-0.3
1,543,812	-				+2.1
1,543,812	-				-0.2
1,543,815	-				+0.2
1,543,815	-				+0.5
1,543,815	-				+1.2
1,543,891	+				+0.2
1,543,892	-				+0.2
1,543,892	-				-0.8
1,543,916	+				+0.3
1,543,997	+				-1.3
1,543,997	+				-0.4
1,543,997	+				-2.5
1,543,997	+				-2.9
1,543,998	-				-2.5
1,543,998	-				-1.2
1,543,998	-				+0.6
1,543,998	-				-2.8
1,543,998	-				+0.0
1,544,015	+				-1.2
1,544,015	+				-1.2
1,544,015	+				-0.6
1,544,015	+				-0.3
1,544,016	-				-1.2
1,544,132	-				-1.2
1,544,132	-				+0.2
1,544,144	+				+1.6
1,544,144	+				+2.6
1,544,144	+				+0.0
1,544,144	+				-3.0
1,544,144	+				-0.2
1,544,144	+				-3.1
1,544,144	+				-1.4
1,544,144	+				-2.7
1,544,144	+				-2.5
1,544,144	+				-1.7
1,544,144	+				-0.4
1,544,144	+				-1.3
1,544,144	+				-0.4
1,544,144	+				-1.8
1,544,144	+				+0.0
1,544,144	+				-0.8
1,544,144	+				-1.7
1,544,144	+				-2.0
1,544,144	+				-1.5
1,544,144	+				-0.4
1,544,144	+				-0.5
1,544,144	+				-1.7
1,544,144	+				-3.1
1,544,144	+				-2.8
1,544,145	-		PFLU_RS06900	0.10	-0.7
1,544,145	-		PFLU_RS06900	0.10	+0.7
1,544,145	-		PFLU_RS06900	0.10	-2.4
1,544,145	-		PFLU_RS06900	0.10	-3.1
1,544,145	-		PFLU_RS06900	0.10	+0.6
1,544,145	-		PFLU_RS06900	0.10	-1.2
1,544,145	-		PFLU_RS06900	0.10	+2.8
1,544,145	-		PFLU_RS06900	0.10	-2.3
1,544,145	-		PFLU_RS06900	0.10	+0.6
1,544,145	-		PFLU_RS06900	0.10	-1.7
1,544,145	-		PFLU_RS06900	0.10	+2.3
1,544,145	-		PFLU_RS06900	0.10	-3.6
1,544,145	-		PFLU_RS06900	0.10	-1.3
1,544,145	-		PFLU_RS06900	0.10	-1.5
1,544,145	-		PFLU_RS06900	0.10	+3.7
1,544,145	-		PFLU_RS06900	0.10	-1.8
1,544,145	-		PFLU_RS06900	0.10	-0.4
1,544,270	+		PFLU_RS06900	0.15	-0.3
1,544,270	+		PFLU_RS06900	0.15	-1.5
1,544,270	+		PFLU_RS06900	0.15	-3.3
1,544,270	+		PFLU_RS06900	0.15	-2.3
1,544,270	+		PFLU_RS06900	0.15	+1.1
1,544,270	+		PFLU_RS06900	0.15	-3.3
1,544,270	+		PFLU_RS06900	0.15	-2.0
1,544,270	+		PFLU_RS06900	0.15	-0.7
1,544,271	-		PFLU_RS06900	0.16	+0.3
1,544,271	-		PFLU_RS06900	0.16	+0.6
1,544,271	-		PFLU_RS06900	0.16	-2.7
1,544,271	-		PFLU_RS06900	0.16	-0.2
1,544,271	-		PFLU_RS06900	0.16	+0.5
1,544,271	-		PFLU_RS06900	0.16	+0.8
1,544,271	-		PFLU_RS06900	0.16	-3.1
1,544,283	-		PFLU_RS06900	0.16	+0.9
1,544,321	+		PFLU_RS06900	0.18	+1.1
1,544,322	-		PFLU_RS06900	0.18	-0.7
1,544,333	+		PFLU_RS06900	0.18	+1.4
1,544,333	+		PFLU_RS06900	0.18	-1.6
1,544,333	+		PFLU_RS06900	0.18	+1.6
1,544,333	+		PFLU_RS06900	0.18	-1.4
1,544,333	+		PFLU_RS06900	0.18	-1.8
1,544,333	+		PFLU_RS06900	0.18	+1.3
1,544,333	+		PFLU_RS06900	0.18	-2.0
1,544,333	+		PFLU_RS06900	0.18	-1.8
1,544,333	+		PFLU_RS06900	0.18	-3.1
1,544,333	+		PFLU_RS06900	0.18	-1.0
1,544,333	+		PFLU_RS06900	0.18	-0.7
1,544,334	-		PFLU_RS06900	0.18	-0.2
1,544,334	-		PFLU_RS06900	0.18	-3.3
1,544,334	-		PFLU_RS06900	0.18	+0.1
1,544,334	-		PFLU_RS06900	0.18	-0.0
1,544,334	-		PFLU_RS06900	0.18	-2.3
1,544,334	-		PFLU_RS06900	0.18	-0.6
1,544,334	-		PFLU_RS06900	0.18	-0.8
1,544,384	+		PFLU_RS06900	0.20	-1.2
1,544,384	+		PFLU_RS06900	0.20	-1.4
1,544,384	+		PFLU_RS06900	0.20	-1.0
1,544,384	+		PFLU_RS06900	0.20	-1.2
1,544,384	+		PFLU_RS06900	0.20	-0.4
1,544,384	+		PFLU_RS06900	0.20	-0.6
1,544,384	+		PFLU_RS06900	0.20	-1.8
1,544,384	+		PFLU_RS06900	0.20	-1.5
1,544,384	+		PFLU_RS06900	0.20	-2.5
1,544,384	+		PFLU_RS06900	0.20	-1.5
1,544,384	+		PFLU_RS06900	0.20	-1.4
1,544,385	-		PFLU_RS06900	0.21	+0.0
1,544,385	-		PFLU_RS06900	0.21	-3.0
1,544,385	-		PFLU_RS06900	0.21	-1.5
1,544,385	-		PFLU_RS06900	0.21	-0.4
1,544,385	-		PFLU_RS06900	0.21	-1.5
1,544,385	-		PFLU_RS06900	0.21	-1.4
1,544,385	-		PFLU_RS06900	0.21	-0.1
1,544,385	-		PFLU_RS06900	0.21	-2.5
1,544,385	-		PFLU_RS06900	0.21	-0.2
1,544,385	-		PFLU_RS06900	0.21	-0.7
1,544,385	-		PFLU_RS06900	0.21	-1.0
1,544,385	-		PFLU_RS06900	0.21	-1.0
1,544,387	+		PFLU_RS06900	0.21	-2.3
1,544,387	+		PFLU_RS06900	0.21	-1.2
1,544,387	+		PFLU_RS06900	0.21	+0.2
1,544,387	+		PFLU_RS06900	0.21	-0.1
1,544,387	+		PFLU_RS06900	0.21	-2.0
1,544,387	+		PFLU_RS06900	0.21	-1.0
1,544,388	-		PFLU_RS06900	0.21	-0.7
1,544,388	-		PFLU_RS06900	0.21	-1.2
1,544,388	-		PFLU_RS06900	0.21	-0.6
1,544,388	-		PFLU_RS06900	0.21	-2.5
1,544,388	-		PFLU_RS06900	0.21	-1.0
1,544,388	-		PFLU_RS06900	0.21	-0.7
1,544,447	+		PFLU_RS06900	0.23	-0.7
1,544,447	+		PFLU_RS06900	0.23	-0.7
1,544,447	+		PFLU_RS06900	0.23	-0.9
1,544,447	+		PFLU_RS06900	0.23	-1.2
1,544,447	+		PFLU_RS06900	0.23	-1.4
1,544,447	+		PFLU_RS06900	0.23	+1.9
1,544,447	+		PFLU_RS06900	0.23	-1.2
1,544,447	+		PFLU_RS06900	0.23	-2.1
1,544,447	+		PFLU_RS06900	0.23	-1.0
1,544,447	+		PFLU_RS06900	0.23	-2.1
1,544,447	+		PFLU_RS06900	0.23	-0.4
1,544,447	+		PFLU_RS06900	0.23	-2.9
1,544,447	+		PFLU_RS06900	0.23	-0.1
1,544,447	+		PFLU_RS06900	0.23	-2.0
1,544,447	+		PFLU_RS06900	0.23	-0.7
1,544,448	-		PFLU_RS06900	0.23	-0.1
1,544,448	-		PFLU_RS06900	0.23	+0.3
1,544,448	-		PFLU_RS06900	0.23	+1.6
1,544,804	+		PFLU_RS06900	0.39	-0.5
1,544,804	+		PFLU_RS06900	0.39	-0.4
1,544,804	+		PFLU_RS06900	0.39	-2.4
1,544,804	+		PFLU_RS06900	0.39	-1.2
1,544,829	+		PFLU_RS06900	0.40	+0.0
1,544,829	+		PFLU_RS06900	0.40	+0.0
1,544,830	-		PFLU_RS06900	0.40	-1.7
1,544,830	-		PFLU_RS06900	0.40	+0.5
1,544,830	-		PFLU_RS06900	0.40	-1.1
1,544,830	-		PFLU_RS06900	0.40	-2.5
1,544,830	-		PFLU_RS06900	0.40	+0.6
1,544,830	-		PFLU_RS06900	0.40	+0.0
1,544,849	+		PFLU_RS06900	0.41	-2.7
1,544,849	+		PFLU_RS06900	0.41	-1.0
1,544,850	-		PFLU_RS06900	0.41	-1.4
1,545,034	+		PFLU_RS06900	0.49	-2.0
1,545,034	+		PFLU_RS06900	0.49	+2.4
1,545,034	+		PFLU_RS06900	0.49	-0.1
1,545,034	+		PFLU_RS06900	0.49	-2.2
1,545,035	-		PFLU_RS06900	0.49	-1.5
1,545,092	+		PFLU_RS06900	0.51	+0.8
1,545,092	+		PFLU_RS06900	0.51	+0.6
1,545,092	+		PFLU_RS06900	0.51	+1.3
1,545,093	-		PFLU_RS06900	0.51	+0.0
1,545,093	-		PFLU_RS06900	0.51	-1.5
1,545,093	-		PFLU_RS06900	0.51	-2.2
1,545,134	+		PFLU_RS06900	0.53	-0.0
1,545,161	+		PFLU_RS06900	0.54	-1.0
1,545,161	+		PFLU_RS06900	0.54	-0.0
1,545,161	+		PFLU_RS06900	0.54	+0.3
1,545,162	-		PFLU_RS06900	0.54	+0.0
1,545,162	-		PFLU_RS06900	0.54	-0.4
1,545,251	+		PFLU_RS06900	0.58	-1.7
1,545,515	+		PFLU_RS06900	0.70	-0.5
1,545,515	+		PFLU_RS06900	0.70	-2.7
1,545,515	+		PFLU_RS06900	0.70	-2.2
1,545,515	+		PFLU_RS06900	0.70	-1.2
1,545,524	+		PFLU_RS06900	0.70	-2.1
1,545,524	+		PFLU_RS06900	0.70	+1.0
1,545,524	+		PFLU_RS06900	0.70	-1.6
1,545,524	+		PFLU_RS06900	0.70	-1.5
1,545,524	+		PFLU_RS06900	0.70	-0.8
1,545,524	+		PFLU_RS06900	0.70	+1.5
1,545,524	+		PFLU_RS06900	0.70	+0.6
1,545,524	+		PFLU_RS06900	0.70	-1.2
1,545,524	+		PFLU_RS06900	0.70	+1.5
1,545,525	-		PFLU_RS06900	0.70	+2.1
1,545,525	-		PFLU_RS06900	0.70	-2.0
1,545,525	-		PFLU_RS06900	0.70	-3.1
1,545,525	-		PFLU_RS06900	0.70	-1.8
1,545,525	-		PFLU_RS06900	0.70	+2.4
1,545,525	-		PFLU_RS06900	0.70	-0.7
1,545,557	+		PFLU_RS06900	0.72	-1.2
1,545,557	+		PFLU_RS06900	0.72	+0.3
1,545,557	+		PFLU_RS06900	0.72	-2.1
1,545,557	+		PFLU_RS06900	0.72	+2.5
1,545,557	+		PFLU_RS06900	0.72	-2.1
1,545,686	+		PFLU_RS06900	0.77	-2.4
1,545,686	+		PFLU_RS06900	0.77	-1.9
1,545,686	+		PFLU_RS06900	0.77	-0.4
1,545,686	+		PFLU_RS06900	0.77	+0.4
1,545,686	+		PFLU_RS06900	0.77	+1.9
1,545,686	+		PFLU_RS06900	0.77	-1.4
1,545,686	+		PFLU_RS06900	0.77	-3.1
1,545,686	+		PFLU_RS06900	0.77	-0.3
1,545,687	-		PFLU_RS06900	0.77	-1.7
1,545,687	-		PFLU_RS06900	0.77	+1.0
1,545,687	-		PFLU_RS06900	0.77	-0.2
1,545,687	-		PFLU_RS06900	0.77	-0.5
1,545,687	-		PFLU_RS06900	0.77	-2.3
1,545,687	-		PFLU_RS06900	0.77	+0.3
1,545,687	-		PFLU_RS06900	0.77	-2.2
1,545,687	-		PFLU_RS06900	0.77	+1.9
1,545,893	+		PFLU_RS06900	0.86	+1.4
1,545,893	+		PFLU_RS06900	0.86	-1.5
1,546,125	+				-1.1
1,546,210	+				+1.6
1,546,274	+				+0.5
1,546,274	+				-1.6
1,546,274	+				+2.5
1,546,274	+				+2.4
1,546,274	+				-1.0
1,546,274	+				-1.5
1,546,274	+				-0.2
1,546,275	-				+1.5
1,546,275	-				-0.4
1,546,275	-				-2.0
1,546,275	-				-0.7
1,546,275	-				-1.7
1,546,275	-				+0.2
1,546,275	-				+0.0
1,546,299	+				-1.8
1,546,300	-				-1.2
1,546,344	+				+0.0
1,546,344	+				-0.4
1,546,344	+				+1.0
1,546,344	+				+0.9
1,546,344	+				+0.0
1,546,344	+				-1.4
1,546,344	+				-0.7
1,546,345	-				+1.5
1,546,345	-				+0.6
1,546,345	-				+1.9
1,546,345	-				+1.3
1,546,381	+				-1.0
1,546,382	-				-0.7
1,546,401	+				+1.0
1,546,401	+				+0.5
1,546,401	+				-0.7
1,546,401	+				-0.7
1,546,401	+				+1.9
1,546,401	+				-1.0
1,546,401	+				+0.8
1,546,401	+				-0.2
1,546,401	+				-1.8
1,546,401	+				-1.2
1,546,401	+				-1.3
1,546,401	+				-1.8
1,546,402	-				+1.4
1,546,402	-				+1.0
1,546,402	-				+1.9
1,546,402	-				+0.0
1,546,402	-				-0.7
1,546,402	-				-1.8
1,546,402	-				-2.0
1,546,402	-				+0.9
1,546,402	-				+0.0
1,546,402	-				-1.0
1,546,402	-				+1.3
1,546,402	-				+0.0
1,546,403	+				-1.4
1,546,403	+				+1.8
1,546,403	+				+0.3
1,546,403	+				-0.1
1,546,404	-				-0.5
1,546,404	-				+0.2
1,546,404	-				+2.1
1,546,404	-				+0.6
1,546,404	-				+0.7
1,546,415	+				+0.6
1,546,498	+				-1.0
1,546,499	-				+0.4
1,546,593	+		PFLU_RS06905	0.24	-0.5
1,546,594	-		PFLU_RS06905	0.24	+1.5
1,546,594	-		PFLU_RS06905	0.24	-2.4
1,546,929	+		PFLU_RS06905	0.78	-1.6
1,546,930	-		PFLU_RS06905	0.79	-0.5
1,546,930	-		PFLU_RS06905	0.79	-1.5
1,546,930	-		PFLU_RS06905	0.79	-1.5
1,546,980	+		PFLU_RS06905	0.87	+0.2
1,546,980	+		PFLU_RS06905	0.87	+0.9
1,546,980	+		PFLU_RS06905	0.87	+2.3
1,546,980	+		PFLU_RS06905	0.87	-0.7
1,546,980	+		PFLU_RS06905	0.87	+0.4
1,546,980	+		PFLU_RS06905	0.87	-0.7
1,546,980	+		PFLU_RS06905	0.87	+0.5
1,546,980	+		PFLU_RS06905	0.87	+1.3
1,546,980	+		PFLU_RS06905	0.87	-1.2
1,546,981	-		PFLU_RS06905	0.87	-0.1
1,546,981	-		PFLU_RS06905	0.87	+1.9
1,546,981	-		PFLU_RS06905	0.87	+0.0
1,546,981	-		PFLU_RS06905	0.87	+2.1
1,546,981	-		PFLU_RS06905	0.87	-0.7
1,546,981	-		PFLU_RS06905	0.87	+0.7
1,547,058	+				-2.1
1,547,058	+				+0.6
1,547,058	+				-0.0
1,547,059	-				+0.8
1,547,059	-				+2.4
1,547,059	-				-2.5
1,547,090	-				-0.7
1,547,096	-				-2.4