Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05675

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
1,279,798	+				+1.5
1,279,798	+				-2.6
1,279,798	+				+1.2
1,279,798	+				-0.6
1,279,798	+				+1.0
1,279,798	+				-1.5
1,279,799	-				+0.1
1,279,799	-				+0.7
1,279,799	-				-1.1
1,279,799	-				-0.2
1,279,799	-				-0.5
1,279,799	-				-2.6
1,279,799	-				-0.9
1,279,799	-				+0.1
1,279,804	+				-0.9
1,279,804	+				+2.0
1,279,804	+				-1.3
1,279,804	+				-1.5
1,279,805	-				+2.4
1,279,805	-				-3.3
1,279,805	-				-1.8
1,279,805	-				-0.6
1,279,829	+				+0.4
1,279,830	-				+0.7
1,279,885	+				-0.1
1,279,885	+				-1.6
1,279,885	+				-0.5
1,279,886	-				+2.5
1,279,886	-				+1.9
1,279,886	-				-0.7
1,279,886	-				+2.5
1,279,931	+				+3.2
1,279,931	+				-0.9
1,279,932	-				-0.5
1,279,932	-				+2.2
1,279,932	-				-1.9
1,279,946	+				-2.8
1,279,946	+				-0.6
1,279,946	+				-2.4
1,279,946	+				+0.9
1,279,947	-				+0.3
1,279,971	+				+0.7
1,280,066	+		PFLU_RS05670	0.12	-0.4
1,280,067	-		PFLU_RS05670	0.12	-1.8
1,280,067	-		PFLU_RS05670	0.12	-1.0
1,280,093	+		PFLU_RS05670	0.18	+0.0
1,280,294	+		PFLU_RS05670	0.61	+1.6
1,280,294	+		PFLU_RS05670	0.61	-2.1
1,280,295	-		PFLU_RS05670	0.61	-0.6
1,280,295	-		PFLU_RS05670	0.61	-0.9
1,280,301	+		PFLU_RS05670	0.62	-1.3
1,280,301	+		PFLU_RS05670	0.62	-0.9
1,280,301	+		PFLU_RS05670	0.62	-1.3
1,280,301	+		PFLU_RS05670	0.62	+2.0
1,280,302	-		PFLU_RS05670	0.62	+1.7
1,280,302	-		PFLU_RS05670	0.62	-1.9
1,280,302	-		PFLU_RS05670	0.62	-0.5
1,280,302	-		PFLU_RS05670	0.62	+1.0
1,280,302	-		PFLU_RS05670	0.62	+1.7
1,280,302	-		PFLU_RS05670	0.62	-1.5
1,280,302	-		PFLU_RS05670	0.62	+1.7
1,280,347	+		PFLU_RS05670	0.72	+1.1
1,280,347	+		PFLU_RS05670	0.72	-0.0
1,280,347	+		PFLU_RS05670	0.72	-1.5
1,280,347	+		PFLU_RS05670	0.72	+1.1
1,280,348	-		PFLU_RS05670	0.72	+0.9
1,280,348	-		PFLU_RS05670	0.72	-1.1
1,280,348	-		PFLU_RS05670	0.72	-0.5
1,280,348	-		PFLU_RS05670	0.72	+0.8
1,280,443	+				-0.9
1,280,443	+				-3.4
1,280,444	-				+2.7
1,280,444	-				-0.5
1,280,541	+				-0.3
1,280,541	+				-1.1
1,280,541	+				-0.3
1,280,541	+				-1.0
1,280,541	+				+0.4
1,280,541	+				-0.4
1,280,542	-				-0.3
1,280,553	+				-1.1
1,280,553	+				-1.3
1,280,553	+				-3.0
1,280,553	+				-1.6
1,280,553	+				-1.3
1,280,553	+				+0.7
1,280,553	+				-0.6
1,280,553	+				-1.5
1,280,554	-				+0.1
1,280,554	-				+2.7
1,280,554	-				+0.8
1,280,554	-				-1.6
1,280,554	-				+0.4
1,280,554	-				+0.2
1,280,554	-				+0.2
1,280,554	-				-1.5
1,280,554	-				-2.3
1,280,554	-				-3.2
1,280,566	+				-0.6
1,280,566	+				+0.8
1,280,566	+				-1.2
1,280,566	+				-3.4
1,280,566	+				+0.7
1,280,567	-				+0.9
1,280,567	-				+1.4
1,280,567	-				+1.7
1,280,567	-				+1.2
1,280,567	-				+0.5
1,280,567	-				+0.9
1,280,574	+				+0.7
1,280,575	-				+2.8
1,280,576	+				-1.1
1,280,576	+				-1.5
1,280,576	+				+0.5
1,280,576	+				-1.1
1,280,576	+				-0.1
1,280,576	+				+0.1
1,280,576	+				-1.7
1,280,576	+				+0.1
1,280,576	+				-1.4
1,280,576	+				-0.1
1,280,577	-				+0.7
1,280,577	-				+0.7
1,280,577	-				+0.5
1,280,577	-				-2.4
1,280,577	-				-1.3
1,280,577	-				-0.8
1,280,577	-				+2.3
1,280,577	-				+1.7
1,280,577	-				-0.6
1,280,599	+				-0.6
1,280,599	+				-0.8
1,280,599	+				+0.7
1,280,599	+				+0.7
1,280,600	-				-0.1
1,280,600	-				+1.7
1,280,600	-				+0.1
1,280,600	-				-0.1
1,280,600	-				-0.6
1,280,805	+		PFLU_RS05675	0.17	-2.5
1,280,805	+		PFLU_RS05675	0.17	+0.1
1,280,805	+		PFLU_RS05675	0.17	-3.0
1,280,806	-		PFLU_RS05675	0.17	-0.2
1,280,806	-		PFLU_RS05675	0.17	-2.4
1,280,806	-		PFLU_RS05675	0.17	-2.3
1,280,806	-		PFLU_RS05675	0.17	-2.0
1,280,871	+		PFLU_RS05675	0.23	-1.9
1,280,894	+		PFLU_RS05675	0.25	-0.1
1,280,894	+		PFLU_RS05675	0.25	-1.8
1,280,894	+		PFLU_RS05675	0.25	-1.8
1,280,894	+		PFLU_RS05675	0.25	-0.9
1,280,894	+		PFLU_RS05675	0.25	-1.0
1,280,895	-		PFLU_RS05675	0.25	-1.4
1,280,895	-		PFLU_RS05675	0.25	-2.0
1,280,895	-		PFLU_RS05675	0.25	-2.0
1,280,895	-		PFLU_RS05675	0.25	-1.3
1,280,895	-		PFLU_RS05675	0.25	-0.1
1,280,895	-		PFLU_RS05675	0.25	+1.5
1,280,895	-		PFLU_RS05675	0.25	-2.1
1,280,895	-		PFLU_RS05675	0.25	-1.9
1,280,897	+		PFLU_RS05675	0.25	-3.7
1,280,897	+		PFLU_RS05675	0.25	-2.1
1,280,897	+		PFLU_RS05675	0.25	-2.6
1,280,897	+		PFLU_RS05675	0.25	-0.6
1,280,897	+		PFLU_RS05675	0.25	+0.7
1,280,897	+		PFLU_RS05675	0.25	-0.3
1,280,897	+		PFLU_RS05675	0.25	-1.3
1,280,897	+		PFLU_RS05675	0.25	-2.1
1,280,897	+		PFLU_RS05675	0.25	-1.3
1,280,897	+		PFLU_RS05675	0.25	+1.6
1,280,897	+		PFLU_RS05675	0.25	+0.4
1,280,897	+		PFLU_RS05675	0.25	-0.3
1,280,898	-		PFLU_RS05675	0.25	-1.6
1,280,898	-		PFLU_RS05675	0.25	-0.8
1,280,898	-		PFLU_RS05675	0.25	+1.1
1,280,898	-		PFLU_RS05675	0.25	-2.2
1,280,898	-		PFLU_RS05675	0.25	-0.3
1,280,898	-		PFLU_RS05675	0.25	-0.6
1,280,898	-		PFLU_RS05675	0.25	-1.8
1,280,898	-		PFLU_RS05675	0.25	-1.8
1,280,898	-		PFLU_RS05675	0.25	+0.1
1,280,898	-		PFLU_RS05675	0.25	+0.1
1,280,898	-		PFLU_RS05675	0.25	-1.5
1,280,918	-		PFLU_RS05675	0.27	-1.9
1,280,928	+		PFLU_RS05675	0.28	-1.3
1,280,928	+		PFLU_RS05675	0.28	-1.4
1,280,928	+		PFLU_RS05675	0.28	+0.1
1,280,929	-		PFLU_RS05675	0.28	-0.5
1,280,929	-		PFLU_RS05675	0.28	-1.5
1,280,929	-		PFLU_RS05675	0.28	+2.3
1,280,929	-		PFLU_RS05675	0.28	-3.0
1,280,929	-		PFLU_RS05675	0.28	-1.1
1,280,929	-		PFLU_RS05675	0.28	-2.1
1,281,003	+		PFLU_RS05675	0.35	-2.2
1,281,003	+		PFLU_RS05675	0.35	+0.4
1,281,003	+		PFLU_RS05675	0.35	-0.3
1,281,003	+		PFLU_RS05675	0.35	-1.9
1,281,003	+		PFLU_RS05675	0.35	-1.9
1,281,003	+		PFLU_RS05675	0.35	-1.6
1,281,003	+		PFLU_RS05675	0.35	+1.0
1,281,004	-		PFLU_RS05675	0.35	-1.6
1,281,004	-		PFLU_RS05675	0.35	+0.3
1,281,004	-		PFLU_RS05675	0.35	-3.2
1,281,004	-		PFLU_RS05675	0.35	-2.4
1,281,004	-		PFLU_RS05675	0.35	+0.1
1,281,004	-		PFLU_RS05675	0.35	-0.1
1,281,004	-		PFLU_RS05675	0.35	-1.6
1,281,004	-		PFLU_RS05675	0.35	-2.7
1,281,016	+		PFLU_RS05675	0.36	-0.3
1,281,017	-		PFLU_RS05675	0.36	-1.1
1,281,030	+		PFLU_RS05675	0.37	-0.3
1,281,030	+		PFLU_RS05675	0.37	-2.0
1,281,030	+		PFLU_RS05675	0.37	-2.2
1,281,030	+		PFLU_RS05675	0.37	-2.3
1,281,030	+		PFLU_RS05675	0.37	-2.7
1,281,030	+		PFLU_RS05675	0.37	-0.5
1,281,030	+		PFLU_RS05675	0.37	+0.5
1,281,030	+		PFLU_RS05675	0.37	-2.5
1,281,031	-		PFLU_RS05675	0.37	-2.1
1,281,031	-		PFLU_RS05675	0.37	-0.9
1,281,031	-		PFLU_RS05675	0.37	-0.7
1,281,031	-		PFLU_RS05675	0.37	-2.5
1,281,031	-		PFLU_RS05675	0.37	-1.8
1,281,031	-		PFLU_RS05675	0.37	-0.9
1,281,031	-		PFLU_RS05675	0.37	-0.5
1,281,031	-		PFLU_RS05675	0.37	-0.8
1,281,031	-		PFLU_RS05675	0.37	-2.0
1,281,051	+		PFLU_RS05675	0.39	-0.9
1,281,051	+		PFLU_RS05675	0.39	+1.0
1,281,051	+		PFLU_RS05675	0.39	-1.1
1,281,052	-		PFLU_RS05675	0.39	-2.0
1,281,060	+		PFLU_RS05675	0.40	+0.7
1,281,060	+		PFLU_RS05675	0.40	-2.6
1,281,060	+		PFLU_RS05675	0.40	-0.2
1,281,060	+		PFLU_RS05675	0.40	-1.9
1,281,060	+		PFLU_RS05675	0.40	-2.7
1,281,060	+		PFLU_RS05675	0.40	-1.9
1,281,060	+		PFLU_RS05675	0.40	-2.6
1,281,061	-		PFLU_RS05675	0.40	-1.8
1,281,061	-		PFLU_RS05675	0.40	-0.8
1,281,061	-		PFLU_RS05675	0.40	-1.9
1,281,061	-		PFLU_RS05675	0.40	-0.7
1,281,061	-		PFLU_RS05675	0.40	-2.1
1,281,061	-		PFLU_RS05675	0.40	-2.6
1,281,061	-		PFLU_RS05675	0.40	-1.8
1,281,061	-		PFLU_RS05675	0.40	-2.4
1,281,061	-		PFLU_RS05675	0.40	-1.3
1,281,061	-		PFLU_RS05675	0.40	+1.1
1,281,248	+		PFLU_RS05675	0.57	-1.0
1,281,249	-		PFLU_RS05675	0.57	-0.4
1,281,249	-		PFLU_RS05675	0.57	-0.4
1,281,290	+		PFLU_RS05675	0.61	-0.6
1,281,291	-		PFLU_RS05675	0.61	-2.4
1,281,291	-		PFLU_RS05675	0.61	+0.1
1,281,453	+		PFLU_RS05675	0.75	-1.9
1,281,453	+		PFLU_RS05675	0.75	+0.4
1,281,453	+		PFLU_RS05675	0.75	-3.6
1,281,454	-		PFLU_RS05675	0.76	-0.6
1,281,454	-		PFLU_RS05675	0.76	-3.2
1,281,454	-		PFLU_RS05675	0.76	-1.2
1,281,454	-		PFLU_RS05675	0.76	-1.3
1,281,475	+		PFLU_RS05675	0.77	-3.0
1,281,475	+		PFLU_RS05675	0.77	-1.2
1,281,475	+		PFLU_RS05675	0.77	-1.4
1,281,475	+		PFLU_RS05675	0.77	-0.3
1,281,475	+		PFLU_RS05675	0.77	-1.9
1,281,475	+		PFLU_RS05675	0.77	-3.5
1,281,476	-		PFLU_RS05675	0.78	-1.5
1,281,476	-		PFLU_RS05675	0.78	-1.5
1,281,625	+				+0.7
1,281,710	+				-2.1
1,281,710	+				-1.6
1,281,710	+				+0.1
1,281,710	+				-0.6
1,281,710	+				+0.1
1,281,711	-				-1.8
1,281,711	-				-2.8
1,281,711	-				-1.3
1,281,711	-				-1.3
1,281,711	-				-0.4
1,281,734	+				-2.7
1,281,734	+				+0.0
1,281,734	+				-2.4
1,281,734	+				-1.1
1,281,734	+				+2.2
1,281,734	+				+1.9
1,281,734	+				+0.1
1,281,735	-				+3.8
1,281,735	-				+0.1
1,281,735	-				-0.2
1,281,735	-				-2.5
1,281,735	-				-2.5
1,281,735	-				-2.0
1,281,735	-				-2.8
1,281,735	-				-0.6
1,282,646	-				+1.0
1,282,646	-				+1.7
1,282,646	-				+1.9
1,282,646	-				+1.7
1,282,646	-				-1.0
1,282,646	-				+0.7
1,282,646	-				-1.1
1,282,646	-				-0.9
1,282,650	-				-0.9
1,282,650	-				+2.6
1,282,650	-				-0.3
1,282,650	-				-0.6
1,282,650	-				+1.7
1,282,673	-				+1.1
1,282,673	-				-1.9
1,282,689	-				+1.9
1,282,689	-				-0.9
1,282,689	-				-0.2
1,282,689	-				+2.4
1,282,689	-				-1.6
1,282,689	-				+3.6