Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0376

Experiment: DAC15 _cps3_0.1MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0375 and BT0376 are separated by 351 nucleotidesBT0376 and BT0377 are separated by 6 nucleotidesBT0377 and BT0378 are separated by 53 nucleotides BT0375: BT0375 - integrase (NCBI ptt file), at 462,368 to 463,057 BT0375 BT0376: BT0376 - putative transcriptional regulator (NCBI ptt file), at 463,409 to 463,987 BT0376 BT0377: BT0377 - conserved hypothetical protein (NCBI ptt file), at 463,994 to 464,353 BT0377 BT0378: BT0378 - capsular polysaccharide biosynthesis protein capD (NCBI ptt file), at 464,407 to 466,332 BT0378 Position (kb) 463 464Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 462.480 kb on - strand, within BT0375at 462.659 kb on - strand, within BT0375at 462.774 kb on - strand, within BT0375at 462.864 kb on - strand, within BT0375at 462.864 kb on - strand, within BT0375at 462.864 kb on - strand, within BT0375at 462.865 kb on + strand, within BT0375at 462.865 kb on + strand, within BT0375at 462.868 kb on + strand, within BT0375at 462.887 kb on - strand, within BT0375at 462.889 kb on + strand, within BT0375at 462.944 kb on - strand, within BT0375at 462.998 kb on - strandat 463.099 kb on + strandat 463.107 kb on - strandat 463.107 kb on - strandat 463.253 kb on + strandat 463.276 kb on + strandat 463.296 kb on - strandat 463.296 kb on - strandat 463.352 kb on - strandat 463.491 kb on - strand, within BT0376at 463.704 kb on - strand, within BT0376at 463.921 kb on + strand, within BT0376at 463.962 kb on + strandat 463.963 kb on - strandat 463.986 kb on - strandat 464.089 kb on - strand, within BT0377at 464.148 kb on - strand, within BT0377at 464.550 kb on + strandat 464.575 kb on - strandat 464.638 kb on - strand, within BT0378at 464.948 kb on - strand, within BT0378at 464.957 kb on + strand, within BT0378at 464.958 kb on - strand, within BT0378

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Per-strain Table

Position Strand Gene LocusTag Fraction DAC15 _cps3_0.1MOI
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462,480 - BT0375 0.16 -1.5
462,659 - BT0375 0.42 +1.5
462,774 - BT0375 0.59 -3.1
462,864 - BT0375 0.72 -0.6
462,864 - BT0375 0.72 +0.4
462,864 - BT0375 0.72 -2.2
462,865 + BT0375 0.72 -1.4
462,865 + BT0375 0.72 -1.4
462,868 + BT0375 0.72 +1.9
462,887 - BT0375 0.75 -1.4
462,889 + BT0375 0.76 +1.4
462,944 - BT0375 0.83 -0.6
462,998 - -1.1
463,099 + -1.6
463,107 - -1.9
463,107 - -0.1
463,253 + +4.3
463,276 + -1.4
463,296 - +0.3
463,296 - -0.0
463,352 - -0.6
463,491 - BT0376 0.14 -2.5
463,704 - BT0376 0.51 -2.4
463,921 + BT0376 0.88 -1.4
463,962 + -0.9
463,963 - -1.4
463,986 - +1.5
464,089 - BT0377 0.26 +0.4
464,148 - BT0377 0.43 +0.7
464,550 + +1.0
464,575 - -1.9
464,638 - BT0378 0.12 -0.6
464,948 - BT0378 0.28 -0.5
464,957 + BT0378 0.29 +0.2
464,958 - BT0378 0.29 +1.0

Or see this region's nucleotide sequence