Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29245

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
6,499,488	-		PFLU_RS29240	0.66	+1.9
6,499,526	+		PFLU_RS29240	0.67	-1.8
6,499,527	-		PFLU_RS29240	0.68	+1.1
6,499,670	+		PFLU_RS29240	0.73	-1.8
6,499,670	+		PFLU_RS29240	0.73	+1.1
6,499,694	+		PFLU_RS29240	0.73	-1.9
6,499,694	+		PFLU_RS29240	0.73	-1.5
6,499,694	+		PFLU_RS29240	0.73	-0.1
6,499,694	+		PFLU_RS29240	0.73	+1.5
6,499,695	-		PFLU_RS29240	0.73	-1.0
6,499,695	-		PFLU_RS29240	0.73	-0.4
6,499,766	+		PFLU_RS29240	0.76	+1.9
6,499,766	+		PFLU_RS29240	0.76	+1.0
6,499,766	+		PFLU_RS29240	0.76	+1.1
6,499,767	-		PFLU_RS29240	0.76	-1.9
6,499,767	-		PFLU_RS29240	0.76	+0.6
6,499,767	-		PFLU_RS29240	0.76	-0.6
6,499,790	+		PFLU_RS29240	0.77	+0.0
6,499,790	+		PFLU_RS29240	0.77	-1.5
6,499,790	+		PFLU_RS29240	0.77	-1.4
6,499,791	-		PFLU_RS29240	0.77	-0.3
6,499,791	-		PFLU_RS29240	0.77	+0.1
6,499,791	-		PFLU_RS29240	0.77	-2.8
6,499,791	-		PFLU_RS29240	0.77	-2.1
6,499,868	-		PFLU_RS29240	0.80	-1.8
6,499,883	+		PFLU_RS29240	0.80	+0.5
6,499,883	+		PFLU_RS29240	0.80	-3.1
6,499,884	-		PFLU_RS29240	0.80	+5.0
6,499,913	+		PFLU_RS29240	0.81	-0.8
6,499,913	+		PFLU_RS29240	0.81	-0.5
6,499,913	+		PFLU_RS29240	0.81	-3.3
6,499,913	+		PFLU_RS29240	0.81	+1.0
6,499,913	+		PFLU_RS29240	0.81	+1.5
6,499,913	+		PFLU_RS29240	0.81	+0.4
6,499,913	+		PFLU_RS29240	0.81	-2.8
6,499,913	+		PFLU_RS29240	0.81	+1.0
6,499,913	+		PFLU_RS29240	0.81	-1.0
6,499,913	+		PFLU_RS29240	0.81	-0.8
6,499,913	+		PFLU_RS29240	0.81	+1.0
6,499,913	+		PFLU_RS29240	0.81	-1.0
6,499,913	+		PFLU_RS29240	0.81	-0.5
6,499,913	+		PFLU_RS29240	0.81	+1.6
6,499,913	+		PFLU_RS29240	0.81	+1.8
6,499,913	+		PFLU_RS29240	0.81	-0.8
6,499,913	+		PFLU_RS29240	0.81	-2.1
6,499,913	+		PFLU_RS29240	0.81	+1.7
6,499,913	+		PFLU_RS29240	0.81	-1.3
6,499,913	+		PFLU_RS29240	0.81	+0.0
6,499,913	+		PFLU_RS29240	0.81	+0.0
6,499,913	+		PFLU_RS29240	0.81	-2.0
6,499,913	+		PFLU_RS29240	0.81	+0.7
6,499,913	+		PFLU_RS29240	0.81	+1.8
6,499,913	+		PFLU_RS29240	0.81	-1.9
6,499,913	+		PFLU_RS29240	0.81	+2.6
6,499,913	+		PFLU_RS29240	0.81	-1.0
6,499,913	+		PFLU_RS29240	0.81	-1.0
6,499,913	+		PFLU_RS29240	0.81	-0.5
6,499,914	-		PFLU_RS29240	0.81	-0.2
6,499,914	-		PFLU_RS29240	0.81	-0.0
6,499,914	-		PFLU_RS29240	0.81	-1.6
6,499,914	-		PFLU_RS29240	0.81	-0.1
6,499,914	-		PFLU_RS29240	0.81	+0.8
6,499,914	-		PFLU_RS29240	0.81	-1.5
6,499,914	-		PFLU_RS29240	0.81	-1.0
6,499,914	-		PFLU_RS29240	0.81	-0.8
6,499,914	-		PFLU_RS29240	0.81	-1.9
6,499,914	-		PFLU_RS29240	0.81	+2.0
6,499,914	-		PFLU_RS29240	0.81	-1.8
6,499,914	-		PFLU_RS29240	0.81	+1.3
6,499,914	-		PFLU_RS29240	0.81	-0.3
6,499,914	-		PFLU_RS29240	0.81	-1.4
6,499,914	-		PFLU_RS29240	0.81	+3.6
6,499,914	-		PFLU_RS29240	0.81	+0.5
6,499,914	-		PFLU_RS29240	0.81	+0.0
6,499,914	-		PFLU_RS29240	0.81	-0.5
6,499,914	-		PFLU_RS29240	0.81	-1.9
6,499,914	-		PFLU_RS29240	0.81	+0.8
6,499,914	-		PFLU_RS29240	0.81	+2.3
6,499,914	-		PFLU_RS29240	0.81	-0.4
6,499,914	-		PFLU_RS29240	0.81	-1.2
6,499,914	-		PFLU_RS29240	0.81	-2.4
6,499,914	-		PFLU_RS29240	0.81	+1.3
6,499,914	-		PFLU_RS29240	0.81	+2.0
6,499,914	-		PFLU_RS29240	0.81	-1.8
6,499,914	-		PFLU_RS29240	0.81	-0.5
6,499,914	-		PFLU_RS29240	0.81	-0.4
6,499,914	-		PFLU_RS29240	0.81	+1.7
6,499,914	-		PFLU_RS29240	0.81	+0.9
6,499,914	-		PFLU_RS29240	0.81	+0.1
6,499,914	-		PFLU_RS29240	0.81	+2.9
6,499,914	-		PFLU_RS29240	0.81	+1.8
6,499,914	-		PFLU_RS29240	0.81	+0.4
6,499,914	-		PFLU_RS29240	0.81	+0.6
6,499,914	-		PFLU_RS29240	0.81	-0.4
6,499,914	-		PFLU_RS29240	0.81	+1.8
6,499,914	-		PFLU_RS29240	0.81	-0.5
6,499,914	-		PFLU_RS29240	0.81	-0.5
6,499,914	-		PFLU_RS29240	0.81	+1.2
6,499,914	-		PFLU_RS29240	0.81	+0.8
6,499,914	-		PFLU_RS29240	0.81	+1.1
6,500,002	-		PFLU_RS29240	0.84	+0.0
6,500,002	-		PFLU_RS29240	0.84	-1.4
6,500,015	+		PFLU_RS29240	0.85	-1.5
6,500,016	-		PFLU_RS29240	0.85	+1.9
6,500,078	+		PFLU_RS29240	0.87	+0.5
6,500,078	+		PFLU_RS29240	0.87	+0.1
6,500,078	+		PFLU_RS29240	0.87	+0.3
6,500,078	+		PFLU_RS29240	0.87	+2.0
6,500,078	+		PFLU_RS29240	0.87	-1.0
6,500,078	+		PFLU_RS29240	0.87	+0.1
6,500,078	+		PFLU_RS29240	0.87	-0.6
6,500,078	+		PFLU_RS29240	0.87	-0.5
6,500,078	+		PFLU_RS29240	0.87	+2.9
6,500,079	-		PFLU_RS29240	0.87	+1.4
6,500,079	-		PFLU_RS29240	0.87	+0.2
6,500,079	-		PFLU_RS29240	0.87	+0.9
6,500,079	-		PFLU_RS29240	0.87	+0.1
6,500,079	-		PFLU_RS29240	0.87	+0.4
6,500,079	-		PFLU_RS29240	0.87	-0.6
6,500,079	-		PFLU_RS29240	0.87	+0.5
6,500,079	-		PFLU_RS29240	0.87	-2.3
6,500,081	+		PFLU_RS29240	0.87	+0.1
6,500,081	+		PFLU_RS29240	0.87	-3.3
6,500,081	+		PFLU_RS29240	0.87	-0.8
6,500,082	-		PFLU_RS29240	0.87	-1.6
6,500,082	-		PFLU_RS29240	0.87	+2.2
6,500,082	-		PFLU_RS29240	0.87	+0.1
6,500,082	-		PFLU_RS29240	0.87	+0.6
6,500,082	-		PFLU_RS29240	0.87	-0.3
6,500,082	-		PFLU_RS29240	0.87	-1.5
6,500,088	+		PFLU_RS29240	0.87	-1.4
6,500,088	+		PFLU_RS29240	0.87	+0.2
6,500,088	+		PFLU_RS29240	0.87	-0.0
6,500,088	+		PFLU_RS29240	0.87	+0.1
6,500,088	+		PFLU_RS29240	0.87	-0.1
6,500,088	+		PFLU_RS29240	0.87	-0.5
6,500,088	+		PFLU_RS29240	0.87	+1.8
6,500,088	+		PFLU_RS29240	0.87	+1.9
6,500,089	-		PFLU_RS29240	0.87	+0.8
6,500,089	-		PFLU_RS29240	0.87	-1.2
6,500,089	-		PFLU_RS29240	0.87	-0.5
6,500,089	-		PFLU_RS29240	0.87	+2.4
6,500,089	-		PFLU_RS29240	0.87	-2.3
6,500,089	-		PFLU_RS29240	0.87	+1.0
6,500,089	-		PFLU_RS29240	0.87	-0.5
6,500,089	-		PFLU_RS29240	0.87	+0.7
6,500,089	-		PFLU_RS29240	0.87	+0.5
6,500,089	-		PFLU_RS29240	0.87	+1.0
6,500,089	-		PFLU_RS29240	0.87	+1.3
6,500,089	-		PFLU_RS29240	0.87	+1.0
6,500,089	-		PFLU_RS29240	0.87	+0.8
6,500,165	+		PFLU_RS29240	0.90	-1.2
6,500,165	+		PFLU_RS29240	0.90	+0.0
6,500,166	-				-0.9
6,500,172	+				-1.0
6,500,172	+				-0.7
6,500,172	+				+3.5
6,500,172	+				+1.9
6,500,172	+				+2.6
6,500,172	+				+1.8
6,500,172	+				+0.0
6,500,172	+				+1.7
6,500,173	-				-0.7
6,500,173	-				+0.0
6,500,173	-				-1.9
6,500,173	-				+1.4
6,500,173	-				-2.1
6,500,173	-				-0.4
6,500,173	-				+1.2
6,500,173	-				+0.5
6,500,222	+				+2.9
6,500,222	+				+2.0
6,500,222	+				-0.8
6,500,222	+				+1.1
6,500,223	-				+3.8
6,500,223	-				-0.5
6,500,330	+				+2.2
6,500,330	+				+0.2
6,500,330	+				+0.6
6,500,330	+				+1.5
6,500,330	+				-0.3
6,500,330	+				+1.4
6,500,330	+				+5.2
6,500,331	-				-1.0
6,500,331	-				-0.5
6,500,331	-				-1.4
6,500,331	-				-0.2
6,500,331	-				+0.2
6,500,331	-				+0.8
6,500,331	-				-1.5
6,500,331	-				-0.3
6,500,331	-				-1.3
6,500,331	-				+2.6
6,500,331	-				-0.5
6,500,331	-				+0.8
6,500,331	-				-1.2
6,500,331	-				-0.9
6,500,331	-				-0.2
6,500,331	-				-2.2
6,500,331	-				-0.3
6,500,390	+				+0.3
6,500,390	+				-1.9
6,500,390	+				-1.3
6,500,390	+				-1.0
6,500,391	-				+0.8
6,500,391	-				+0.9
6,500,399	+				-0.2
6,500,399	+				+3.7
6,500,400	-				-1.4
6,500,400	-				+1.8
6,500,400	-				+0.8
6,500,400	-				-0.2
6,500,400	-				-0.5
6,500,400	-				-0.2
6,500,400	-				+1.3
6,500,400	-				+1.0
6,500,447	+				+1.6
6,500,447	+				+2.5
6,500,448	-				+1.5
6,500,463	-				+2.0
6,500,479	+				+0.9
6,500,479	+				-1.8
6,500,479	+				-1.6
6,500,480	-				-1.2
6,500,480	-				+1.6
6,500,480	-				-1.0
6,500,480	-				-0.7
6,500,480	-				+2.3
6,500,480	-				+1.1
6,500,480	-				-0.8
6,500,480	-				+0.1
6,500,480	-				-2.8
6,500,480	-				-0.0
6,500,480	-				-1.9
6,500,570	+		PFLU_RS29245	0.22	-1.8
6,500,570	+		PFLU_RS29245	0.22	+1.6
6,500,570	+		PFLU_RS29245	0.22	-0.9
6,500,570	+		PFLU_RS29245	0.22	+1.6
6,500,570	+		PFLU_RS29245	0.22	-0.5
6,500,571	-		PFLU_RS29245	0.23	-0.4
6,500,586	+		PFLU_RS29245	0.26	+0.9
6,500,659	+		PFLU_RS29245	0.44	-1.5
6,500,677	+		PFLU_RS29245	0.48	+3.6
6,500,677	+		PFLU_RS29245	0.48	+2.9
6,500,678	-		PFLU_RS29245	0.49	+1.1
6,500,678	-		PFLU_RS29245	0.49	+2.8
6,500,678	-		PFLU_RS29245	0.49	+2.7
6,500,678	-		PFLU_RS29245	0.49	-1.1
6,500,678	-		PFLU_RS29245	0.49	+0.8
6,500,678	-		PFLU_RS29245	0.49	-1.5
6,500,820	+		PFLU_RS29245	0.83	-2.8
6,500,820	+		PFLU_RS29245	0.83	+0.5
6,500,820	+		PFLU_RS29245	0.83	-2.0
6,500,821	-		PFLU_RS29245	0.83	+1.8
6,500,821	-		PFLU_RS29245	0.83	-0.9
6,500,864	+				-1.7
6,500,865	-				+0.7
6,500,989	+				-0.8
6,500,989	+				-0.2
6,500,989	+				+1.1
6,500,989	+				-1.5
6,500,989	+				+1.2
6,501,006	+				+0.8
6,501,006	+				+1.6
6,501,006	+				-1.7
6,501,006	+				-0.4
6,501,006	+				-1.4
6,501,007	-				+2.8
6,501,007	-				+1.8
6,501,007	-				-1.1
6,501,100	+		PFLU_RS29250	0.37	+1.8
6,501,101	-		PFLU_RS29250	0.37	+0.3
6,501,163	+		PFLU_RS29250	0.65	-2.0
6,501,163	+		PFLU_RS29250	0.65	+1.8
6,501,163	+		PFLU_RS29250	0.65	-0.3
6,501,163	+		PFLU_RS29250	0.65	+1.1
6,501,164	-		PFLU_RS29250	0.66	+0.9
6,501,164	-		PFLU_RS29250	0.66	-0.5
6,501,275	+		PFLU_RS29255	0.10	+0.5
6,501,276	-		PFLU_RS29255	0.11	-1.1
6,501,276	-		PFLU_RS29255	0.11	-2.9
6,501,276	-		PFLU_RS29255	0.11	-2.8
6,501,276	-		PFLU_RS29255	0.11	+0.4
6,501,276	-		PFLU_RS29255	0.11	-1.6
6,501,357	-		PFLU_RS29255	0.35	-2.6
6,501,510	+		PFLU_RS29255	0.81	-0.5
6,501,620	-				+2.5
6,501,679	+				-0.8
6,501,679	+				+2.1
6,501,680	-				-1.2
6,501,680	-				-0.6
6,501,694	+				+1.3
6,501,695	-				+1.4
6,501,695	-				+1.6
6,501,738	-				+1.0
6,501,749	+				-1.1
6,501,749	+				+0.0
6,501,749	+				-0.5
6,501,749	+				-2.1
6,501,750	-				+2.1
6,501,750	-				+2.4
6,501,772	+				-2.1
6,501,772	+				+1.8
6,501,772	+				-0.9
6,501,773	-				-2.0
6,501,773	-				-0.1
6,501,773	-				-2.0
6,501,774	+				+1.6
6,501,774	+				-1.4
6,501,774	+				-0.5
6,501,774	+				-1.0
6,501,774	+				+0.5
6,501,774	+				-0.5
6,501,774	+				+1.4
6,501,788	+				-2.1
6,501,788	+				+1.3
6,501,788	+				+0.9
6,501,788	+				-0.8
6,501,788	+				-2.4
6,501,795	+				+0.0
6,501,795	+				+0.4
6,501,795	+				+1.5
6,501,795	+				+0.2
6,501,795	+				-2.2
6,501,795	+				+1.2
6,501,795	+				+0.8
6,501,795	+				-1.4
6,501,795	+				+0.8
6,501,795	+				+0.7