Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28505

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
6,340,666	+		PFLU_RS28500	0.49	-1.2
6,340,666	+		PFLU_RS28500	0.49	+0.2
6,340,666	+		PFLU_RS28500	0.49	+0.3
6,340,666	+		PFLU_RS28500	0.49	-0.2
6,340,666	+		PFLU_RS28500	0.49	-0.5
6,340,667	-		PFLU_RS28500	0.49	+1.2
6,340,667	-		PFLU_RS28500	0.49	+1.3
6,340,667	-		PFLU_RS28500	0.49	-1.5
6,340,667	-		PFLU_RS28500	0.49	+1.1
6,340,667	-		PFLU_RS28500	0.49	+2.2
6,340,667	-		PFLU_RS28500	0.49	+0.1
6,340,667	-		PFLU_RS28500	0.49	-0.5
6,340,667	-		PFLU_RS28500	0.49	+1.0
6,340,667	-		PFLU_RS28500	0.49	-1.6
6,340,667	-		PFLU_RS28500	0.49	-0.4
6,340,667	-		PFLU_RS28500	0.49	-0.6
6,340,667	-		PFLU_RS28500	0.49	-2.6
6,340,667	-		PFLU_RS28500	0.49	-0.2
6,340,667	-		PFLU_RS28500	0.49	-0.3
6,340,813	+		PFLU_RS28500	0.58	+0.2
6,340,814	-		PFLU_RS28500	0.59	+0.1
6,340,814	-		PFLU_RS28500	0.59	+0.6
6,340,814	-		PFLU_RS28500	0.59	-2.6
6,340,814	-		PFLU_RS28500	0.59	-1.3
6,340,834	+		PFLU_RS28500	0.60	+1.8
6,340,834	+		PFLU_RS28500	0.60	-3.9
6,340,834	+		PFLU_RS28500	0.60	+0.2
6,340,834	+		PFLU_RS28500	0.60	-1.7
6,340,834	+		PFLU_RS28500	0.60	+0.8
6,340,834	+		PFLU_RS28500	0.60	-1.4
6,340,834	+		PFLU_RS28500	0.60	+1.4
6,340,834	+		PFLU_RS28500	0.60	+1.2
6,340,834	+		PFLU_RS28500	0.60	+1.6
6,340,834	+		PFLU_RS28500	0.60	+1.1
6,340,835	-		PFLU_RS28500	0.60	+0.6
6,340,835	-		PFLU_RS28500	0.60	+1.0
6,340,835	-		PFLU_RS28500	0.60	-0.0
6,340,835	-		PFLU_RS28500	0.60	-2.3
6,340,835	-		PFLU_RS28500	0.60	-2.6
6,340,835	-		PFLU_RS28500	0.60	+0.5
6,340,835	-		PFLU_RS28500	0.60	-0.0
6,340,835	-		PFLU_RS28500	0.60	-3.5
6,340,882	+		PFLU_RS28500	0.63	+2.4
6,340,882	+		PFLU_RS28500	0.63	+1.2
6,340,882	+		PFLU_RS28500	0.63	+0.4
6,340,882	+		PFLU_RS28500	0.63	+3.6
6,340,883	-		PFLU_RS28500	0.63	-0.6
6,340,883	-		PFLU_RS28500	0.63	-1.9
6,340,904	+		PFLU_RS28500	0.64	-0.2
6,340,904	+		PFLU_RS28500	0.64	-2.2
6,340,904	+		PFLU_RS28500	0.64	+1.5
6,340,904	+		PFLU_RS28500	0.64	+0.9
6,340,904	+		PFLU_RS28500	0.64	+0.4
6,340,904	+		PFLU_RS28500	0.64	+2.7
6,340,904	+		PFLU_RS28500	0.64	+0.1
6,340,904	+		PFLU_RS28500	0.64	+1.0
6,340,904	+		PFLU_RS28500	0.64	+0.2
6,340,904	+		PFLU_RS28500	0.64	+1.3
6,340,905	-		PFLU_RS28500	0.64	+1.3
6,340,905	-		PFLU_RS28500	0.64	+0.5
6,340,905	-		PFLU_RS28500	0.64	+2.5
6,340,905	-		PFLU_RS28500	0.64	+1.0
6,340,905	-		PFLU_RS28500	0.64	-1.4
6,340,905	-		PFLU_RS28500	0.64	+0.1
6,340,905	-		PFLU_RS28500	0.64	-0.4
6,340,920	+		PFLU_RS28500	0.65	-0.0
6,340,978	-		PFLU_RS28500	0.69	-0.2
6,341,077	+		PFLU_RS28500	0.75	-2.4
6,341,078	-		PFLU_RS28500	0.75	+2.4
6,341,092	+		PFLU_RS28500	0.76	-2.2
6,341,092	+		PFLU_RS28500	0.76	-0.4
6,341,093	-		PFLU_RS28500	0.76	-1.5
6,341,093	-		PFLU_RS28500	0.76	-0.9
6,341,093	-		PFLU_RS28500	0.76	-0.5
6,341,191	+		PFLU_RS28500	0.82	+2.1
6,341,191	+		PFLU_RS28500	0.82	+0.9
6,341,192	-		PFLU_RS28500	0.82	-2.4
6,341,276	+		PFLU_RS28500	0.87	-1.7
6,341,276	+		PFLU_RS28500	0.87	-0.7
6,341,276	+		PFLU_RS28500	0.87	+0.1
6,341,276	+		PFLU_RS28500	0.87	-1.8
6,341,276	+		PFLU_RS28500	0.87	+0.8
6,341,276	+		PFLU_RS28500	0.87	+0.6
6,341,276	+		PFLU_RS28500	0.87	-0.3
6,341,276	+		PFLU_RS28500	0.87	+1.8
6,341,276	+		PFLU_RS28500	0.87	+1.8
6,341,276	+		PFLU_RS28500	0.87	+1.5
6,341,276	+		PFLU_RS28500	0.87	-1.2
6,341,276	+		PFLU_RS28500	0.87	+2.6
6,341,276	+		PFLU_RS28500	0.87	-0.6
6,341,276	+		PFLU_RS28500	0.87	-1.9
6,341,276	+		PFLU_RS28500	0.87	-1.3
6,341,276	+		PFLU_RS28500	0.87	-1.9
6,341,276	+		PFLU_RS28500	0.87	+2.2
6,341,276	+		PFLU_RS28500	0.87	-3.2
6,341,276	+		PFLU_RS28500	0.87	-2.2
6,341,277	-		PFLU_RS28500	0.88	-0.6
6,341,277	-		PFLU_RS28500	0.88	-0.8
6,341,277	-		PFLU_RS28500	0.88	-1.4
6,341,277	-		PFLU_RS28500	0.88	+0.4
6,341,277	-		PFLU_RS28500	0.88	-0.8
6,341,277	-		PFLU_RS28500	0.88	-0.1
6,341,277	-		PFLU_RS28500	0.88	-0.6
6,341,277	-		PFLU_RS28500	0.88	+1.8
6,341,277	-		PFLU_RS28500	0.88	-0.9
6,341,277	-		PFLU_RS28500	0.88	-3.6
6,341,277	-		PFLU_RS28500	0.88	+1.0
6,341,277	-		PFLU_RS28500	0.88	-0.7
6,341,277	-		PFLU_RS28500	0.88	+2.4
6,341,277	-		PFLU_RS28500	0.88	-1.7
6,341,277	-		PFLU_RS28500	0.88	-0.7
6,341,277	-		PFLU_RS28500	0.88	-1.0
6,341,411	+				-3.2
6,341,411	+				-1.7
6,341,411	+				-0.2
6,341,419	+				+0.7
6,341,419	+				-2.8
6,341,419	+				+0.0
6,341,420	-				-1.2
6,341,499	+				-0.3
6,341,499	+				+1.7
6,341,499	+				+0.8
6,341,499	+				-1.0
6,341,499	+				+1.8
6,341,499	+				+0.7
6,341,499	+				-1.7
6,341,499	+				-0.9
6,341,499	+				-0.2
6,341,499	+				+1.0
6,341,499	+				-0.3
6,341,499	+				-1.2
6,341,499	+				+1.1
6,341,499	+				-0.9
6,341,499	+				+2.6
6,341,499	+				+0.6
6,341,499	+				-0.2
6,341,499	+				-1.5
6,341,499	+				+2.2
6,341,499	+				+2.8
6,341,499	+				-0.8
6,341,499	+				+0.2
6,341,499	+				+1.8
6,341,499	+				-0.4
6,341,499	+				+0.9
6,341,499	+				-2.5
6,341,499	+				+0.3
6,341,499	+				+1.8
6,341,499	+				+2.0
6,341,500	-				+0.8
6,341,500	-				-2.0
6,341,500	-				+0.6
6,341,500	-				-2.5
6,341,500	-				+1.3
6,341,500	-				+1.0
6,341,500	-				+0.6
6,341,500	-				-0.3
6,341,500	-				-2.0
6,341,500	-				+2.6
6,341,500	-				+0.9
6,341,500	-				+1.8
6,341,500	-				-1.2
6,341,500	-				-0.8
6,341,500	-				+2.0
6,341,500	-				-1.7
6,341,500	-				-2.2
6,341,500	-				+0.3
6,341,500	-				-0.4
6,341,500	-				+0.1
6,341,500	-				-1.9
6,341,500	-				-0.5
6,341,500	-				-2.0
6,341,500	-				+0.1
6,341,500	-				-1.3
6,341,500	-				+1.3
6,341,500	-				+0.2
6,341,500	-				+0.8
6,341,507	+				-1.2
6,341,507	+				-1.1
6,341,507	+				-2.2
6,341,508	-				+0.4
6,341,508	-				-1.0
6,341,508	-				-1.0
6,341,508	-				-0.5
6,341,508	-				+0.3
6,342,080	+				-1.4
6,342,081	-				+0.2
6,342,081	-				-1.6
6,342,081	-				-0.5
6,342,081	-				-0.1
6,342,081	-				+0.3
6,342,081	-				+3.7
6,342,081	-				-0.2
6,342,165	+				+2.1
6,342,166	-				+2.3
6,342,240	+				-1.5
6,342,240	+				-0.8
6,342,240	+				+1.8
6,342,241	-				-1.2
6,342,241	-				-0.3
6,342,241	-				-0.5
6,342,241	-				-0.5
6,342,241	-				-1.2
6,342,241	-				+0.5
6,342,241	-				+1.3
6,342,288	+				+0.2
6,342,288	+				-0.7
6,342,288	+				-0.4
6,342,288	+				-0.1
6,342,288	+				+0.6
6,342,590	+				+1.3
6,342,679	+				+1.4
6,342,679	+				+0.5
6,342,679	+				+1.1
6,342,679	+				-0.5
6,342,679	+				-1.4
6,342,679	+				+1.8
6,342,679	+				+0.8
6,342,679	+				+0.3
6,342,679	+				-1.4
6,342,679	+				+1.8
6,342,680	-				-0.5
6,342,680	-				-2.1
6,342,680	-				-2.0
6,342,698	+				-1.0
6,342,699	-				+1.5
6,342,699	-				+1.7
6,342,699	-				+0.7
6,342,699	-				-0.8
6,342,784	+		PFLU_RS28515	0.12	+0.8
6,342,808	+		PFLU_RS28515	0.15	+1.1
6,342,911	-		PFLU_RS28515	0.28	+0.1
6,342,911	-		PFLU_RS28515	0.28	+1.8
6,342,911	-		PFLU_RS28515	0.28	-1.4
6,342,911	-		PFLU_RS28515	0.28	-1.5
6,342,911	-		PFLU_RS28515	0.28	-1.3
6,342,926	+		PFLU_RS28515	0.30	+2.3
6,342,927	-		PFLU_RS28515	0.30	+0.2
6,342,927	-		PFLU_RS28515	0.30	+0.6
6,342,927	-		PFLU_RS28515	0.30	-1.4
6,342,982	+		PFLU_RS28515	0.37	+1.6
6,342,982	+		PFLU_RS28515	0.37	+0.5
6,342,982	+		PFLU_RS28515	0.37	-1.5
6,342,982	+		PFLU_RS28515	0.37	+0.9
6,342,982	+		PFLU_RS28515	0.37	+0.6
6,342,982	+		PFLU_RS28515	0.37	+0.7
6,342,982	+		PFLU_RS28515	0.37	+1.0
6,342,982	+		PFLU_RS28515	0.37	+0.2
6,342,982	+		PFLU_RS28515	0.37	-2.0
6,342,982	+		PFLU_RS28515	0.37	+0.9
6,342,982	+		PFLU_RS28515	0.37	+0.5
6,342,983	-		PFLU_RS28515	0.37	-0.7
6,342,983	-		PFLU_RS28515	0.37	-0.8
6,342,983	-		PFLU_RS28515	0.37	-0.7
6,342,983	-		PFLU_RS28515	0.37	+0.6
6,342,983	-		PFLU_RS28515	0.37	-2.6
6,342,983	-		PFLU_RS28515	0.37	-0.0
6,342,983	-		PFLU_RS28515	0.37	-2.6
6,342,983	-		PFLU_RS28515	0.37	-0.5
6,342,983	-		PFLU_RS28515	0.37	-1.1
6,342,983	-		PFLU_RS28515	0.37	+0.1
6,342,983	-		PFLU_RS28515	0.37	-1.4
6,342,983	-		PFLU_RS28515	0.37	-0.5
6,342,983	-		PFLU_RS28515	0.37	-1.0
6,342,983	-		PFLU_RS28515	0.37	-0.0
6,342,983	-		PFLU_RS28515	0.37	-0.3
6,342,983	-		PFLU_RS28515	0.37	-0.5
6,342,986	+		PFLU_RS28515	0.37	-0.2
6,342,986	+		PFLU_RS28515	0.37	+1.3
6,342,986	+		PFLU_RS28515	0.37	-1.8
6,342,986	+		PFLU_RS28515	0.37	+1.5
6,342,986	+		PFLU_RS28515	0.37	+1.9
6,342,986	+		PFLU_RS28515	0.37	+0.9
6,342,986	+		PFLU_RS28515	0.37	+0.7
6,342,986	+		PFLU_RS28515	0.37	+1.0
6,342,986	+		PFLU_RS28515	0.37	-1.4
6,342,986	+		PFLU_RS28515	0.37	-1.0
6,342,986	+		PFLU_RS28515	0.37	-0.3
6,342,986	+		PFLU_RS28515	0.37	+0.1
6,342,986	+		PFLU_RS28515	0.37	-0.0
6,342,986	+		PFLU_RS28515	0.37	+1.8
6,342,986	+		PFLU_RS28515	0.37	+0.6
6,342,986	+		PFLU_RS28515	0.37	+2.7
6,342,986	+		PFLU_RS28515	0.37	+0.8
6,342,986	+		PFLU_RS28515	0.37	+0.1
6,342,986	+		PFLU_RS28515	0.37	-1.9
6,342,986	+		PFLU_RS28515	0.37	-0.2
6,342,986	+		PFLU_RS28515	0.37	+0.3
6,342,986	+		PFLU_RS28515	0.37	+2.2
6,342,986	+		PFLU_RS28515	0.37	+0.3
6,342,986	+		PFLU_RS28515	0.37	-2.9
6,342,986	+		PFLU_RS28515	0.37	-0.8
6,342,986	+		PFLU_RS28515	0.37	+1.8
6,342,986	+		PFLU_RS28515	0.37	+0.7
6,342,986	+		PFLU_RS28515	0.37	-1.5
6,342,986	+		PFLU_RS28515	0.37	-0.5
6,342,986	+		PFLU_RS28515	0.37	-0.5
6,342,987	-		PFLU_RS28515	0.37	+1.5
6,342,987	-		PFLU_RS28515	0.37	+0.2
6,342,987	-		PFLU_RS28515	0.37	+1.1
6,342,987	-		PFLU_RS28515	0.37	-0.3
6,342,987	-		PFLU_RS28515	0.37	-1.5
6,342,987	-		PFLU_RS28515	0.37	-0.8
6,342,987	-		PFLU_RS28515	0.37	+0.1
6,342,987	-		PFLU_RS28515	0.37	-0.1
6,342,987	-		PFLU_RS28515	0.37	-0.3
6,342,987	-		PFLU_RS28515	0.37	-0.1
6,342,987	-		PFLU_RS28515	0.37	+0.9
6,342,987	-		PFLU_RS28515	0.37	+0.3
6,342,987	-		PFLU_RS28515	0.37	+4.0
6,342,987	-		PFLU_RS28515	0.37	+2.2
6,342,987	-		PFLU_RS28515	0.37	-1.0
6,342,987	-		PFLU_RS28515	0.37	+0.9
6,342,987	-		PFLU_RS28515	0.37	-0.4
6,342,987	-		PFLU_RS28515	0.37	+1.7
6,342,987	-		PFLU_RS28515	0.37	+1.1
6,342,987	-		PFLU_RS28515	0.37	-0.2
6,342,987	-		PFLU_RS28515	0.37	-0.8
6,342,987	-		PFLU_RS28515	0.37	+0.3
6,342,987	-		PFLU_RS28515	0.37	-0.4
6,342,987	-		PFLU_RS28515	0.37	-1.2
6,342,989	+		PFLU_RS28515	0.38	-0.5
6,342,989	+		PFLU_RS28515	0.38	+0.8
6,342,989	+		PFLU_RS28515	0.38	-0.4