Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24695

Experiment: acetate 30 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 30 mM (C)
5,530,964	+		PFLU_RS24690	0.43	+4.9
5,530,964	+		PFLU_RS24690	0.43	+1.9
5,530,964	+		PFLU_RS24690	0.43	+0.5
5,530,964	+		PFLU_RS24690	0.43	+2.4
5,530,964	+		PFLU_RS24690	0.43	+2.1
5,530,964	+		PFLU_RS24690	0.43	+1.1
5,530,964	+		PFLU_RS24690	0.43	-0.1
5,530,964	+		PFLU_RS24690	0.43	+1.6
5,530,965	-		PFLU_RS24690	0.43	+3.0
5,530,965	-		PFLU_RS24690	0.43	+2.8
5,530,965	-		PFLU_RS24690	0.43	+3.5
5,530,965	-		PFLU_RS24690	0.43	+2.6
5,530,965	-		PFLU_RS24690	0.43	-0.2
5,530,965	-		PFLU_RS24690	0.43	+1.9
5,530,965	-		PFLU_RS24690	0.43	+2.1
5,530,965	-		PFLU_RS24690	0.43	-1.4
5,530,965	-		PFLU_RS24690	0.43	+3.2
5,530,965	-		PFLU_RS24690	0.43	+2.2
5,530,965	-		PFLU_RS24690	0.43	+2.6
5,530,965	-		PFLU_RS24690	0.43	-0.4
5,530,965	-		PFLU_RS24690	0.43	+0.3
5,531,069	+		PFLU_RS24690	0.50	+3.5
5,531,069	+		PFLU_RS24690	0.50	-0.4
5,531,069	+		PFLU_RS24690	0.50	+1.3
5,531,070	-		PFLU_RS24690	0.50	+1.3
5,531,070	-		PFLU_RS24690	0.50	+2.1
5,531,070	-		PFLU_RS24690	0.50	+3.0
5,531,070	-		PFLU_RS24690	0.50	+1.4
5,531,121	-		PFLU_RS24690	0.54	-1.4
5,531,124	-		PFLU_RS24690	0.54	+2.8
5,531,147	+		PFLU_RS24690	0.56	+2.9
5,531,148	-		PFLU_RS24690	0.56	+1.6
5,531,148	-		PFLU_RS24690	0.56	+2.8
5,531,159	+		PFLU_RS24690	0.56	+3.6
5,531,159	+		PFLU_RS24690	0.56	+0.4
5,531,160	-		PFLU_RS24690	0.57	+1.1
5,531,160	-		PFLU_RS24690	0.57	+2.5
5,531,199	-		PFLU_RS24690	0.59	-1.6
5,531,199	-		PFLU_RS24690	0.59	+2.3
5,531,219	+		PFLU_RS24690	0.61	+1.9
5,531,219	+		PFLU_RS24690	0.61	+2.9
5,531,219	+		PFLU_RS24690	0.61	+3.6
5,531,219	+		PFLU_RS24690	0.61	+2.5
5,531,220	-		PFLU_RS24690	0.61	+2.1
5,531,220	-		PFLU_RS24690	0.61	+1.4
5,531,220	-		PFLU_RS24690	0.61	+2.3
5,531,408	+		PFLU_RS24690	0.74	+2.9
5,531,408	+		PFLU_RS24690	0.74	+1.5
5,531,408	+		PFLU_RS24690	0.74	+3.1
5,531,408	+		PFLU_RS24690	0.74	+1.7
5,531,408	+		PFLU_RS24690	0.74	-2.2
5,531,408	+		PFLU_RS24690	0.74	+2.9
5,531,408	+		PFLU_RS24690	0.74	+2.2
5,531,408	+		PFLU_RS24690	0.74	+2.3
5,531,408	+		PFLU_RS24690	0.74	+3.8
5,531,408	+		PFLU_RS24690	0.74	-2.6
5,531,408	+		PFLU_RS24690	0.74	-2.8
5,531,408	+		PFLU_RS24690	0.74	+2.2
5,531,409	-		PFLU_RS24690	0.74	+1.7
5,531,409	-		PFLU_RS24690	0.74	+2.4
5,531,409	-		PFLU_RS24690	0.74	+0.3
5,531,409	-		PFLU_RS24690	0.74	+2.1
5,531,409	-		PFLU_RS24690	0.74	+2.5
5,531,409	-		PFLU_RS24690	0.74	+2.3
5,531,409	-		PFLU_RS24690	0.74	+2.1
5,531,409	-		PFLU_RS24690	0.74	-2.6
5,531,409	-		PFLU_RS24690	0.74	+2.7
5,531,409	-		PFLU_RS24690	0.74	+3.0
5,531,483	+		PFLU_RS24690	0.79	+2.8
5,531,483	+		PFLU_RS24690	0.79	+2.5
5,531,483	+		PFLU_RS24690	0.79	+4.0
5,531,484	-		PFLU_RS24690	0.79	+1.8
5,531,484	-		PFLU_RS24690	0.79	-1.4
5,531,603	+		PFLU_RS24690	0.87	+4.2
5,531,603	+		PFLU_RS24690	0.87	+2.9
5,531,603	+		PFLU_RS24690	0.87	+3.2
5,531,604	-		PFLU_RS24690	0.87	+3.5
5,531,604	-		PFLU_RS24690	0.87	+2.6
5,531,604	-		PFLU_RS24690	0.87	+1.8
5,531,624	+		PFLU_RS24690	0.88	+1.5
5,531,624	+		PFLU_RS24690	0.88	+2.7
5,531,625	-		PFLU_RS24690	0.88	+4.0
5,531,672	+				+2.6
5,531,672	+				+3.4
5,531,672	+				+2.3
5,531,672	+				-1.2
5,531,672	+				+3.5
5,531,673	-				+1.6
5,531,675	+				-0.6
5,531,675	+				+2.4
5,531,675	+				+1.4
5,531,675	+				+2.8
5,531,675	+				-0.3
5,531,675	+				+3.1
5,531,676	-				+3.0
5,531,676	-				+1.1
5,531,676	-				+4.0
5,531,764	+				+0.0
5,531,764	+				+0.8
5,531,764	+				+0.8
5,531,765	-				+1.5
5,531,779	+				+0.0
5,531,780	-				+2.0
5,531,780	-				+0.4
5,531,792	+				+0.0
5,531,792	+				+2.1
5,531,792	+				+0.6
5,531,792	+				+1.8
5,531,792	+				+0.6
5,531,792	+				+1.3
5,531,792	+				+1.4
5,531,792	+				-1.6
5,531,792	+				+0.6
5,531,792	+				+2.7
5,531,793	-				-1.2
5,531,793	-				-1.0
5,531,793	-				+1.7
5,531,793	-				+0.8
5,531,793	-				+1.7
5,531,859	+				-1.8
5,531,860	-				-2.4
5,531,860	-				+0.3
5,531,860	-				+1.7
5,531,882	+				-0.1
5,531,882	+				+1.4
5,531,883	-				+0.9
5,532,010	+		PFLU_RS24695	0.54	+2.2
5,532,123	-				+0.3
5,532,123	-				+1.4
5,532,182	+				+0.2
5,532,183	-				+0.1
5,532,183	-				-2.2
5,532,509	+		PFLU_RS24700	0.15	+0.8
5,532,509	+		PFLU_RS24700	0.15	-1.7
5,532,839	+		PFLU_RS24700	0.28	+1.5
5,532,839	+		PFLU_RS24700	0.28	-1.1
5,532,839	+		PFLU_RS24700	0.28	-0.3
5,532,839	+		PFLU_RS24700	0.28	+1.3
5,532,839	+		PFLU_RS24700	0.28	-2.3
5,532,840	-		PFLU_RS24700	0.28	+1.0
5,532,840	-		PFLU_RS24700	0.28	-0.1
5,532,840	-		PFLU_RS24700	0.28	+1.3
5,532,840	-		PFLU_RS24700	0.28	+1.5
5,532,840	-		PFLU_RS24700	0.28	+0.3
5,532,840	-		PFLU_RS24700	0.28	+2.7
5,532,840	-		PFLU_RS24700	0.28	+0.1
5,532,840	-		PFLU_RS24700	0.28	+1.5
5,532,840	-		PFLU_RS24700	0.28	+0.5
5,532,840	-		PFLU_RS24700	0.28	+1.9
5,532,840	-		PFLU_RS24700	0.28	+2.8
5,532,880	+		PFLU_RS24700	0.29	+1.2
5,532,881	-		PFLU_RS24700	0.29	+0.9
5,532,923	+		PFLU_RS24700	0.31	+0.0
5,532,923	+		PFLU_RS24700	0.31	-1.7
5,532,924	-		PFLU_RS24700	0.31	+1.6
5,532,924	-		PFLU_RS24700	0.31	+2.1
5,532,924	-		PFLU_RS24700	0.31	+0.4
5,532,924	-		PFLU_RS24700	0.31	-1.3
5,532,924	-		PFLU_RS24700	0.31	+1.3
5,532,971	+		PFLU_RS24700	0.33	+0.4
5,532,971	+		PFLU_RS24700	0.33	-1.7