Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12970

Experiment: p-Coumaric 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric 2 mM (C)
2,926,727	+		PFLU_RS12965	0.32	+1.3
2,926,727	+		PFLU_RS12965	0.32	-0.8
2,926,728	-		PFLU_RS12965	0.32	-0.8
2,926,728	-		PFLU_RS12965	0.32	-0.8
2,926,728	-		PFLU_RS12965	0.32	-1.8
2,926,728	-		PFLU_RS12965	0.32	+0.5
2,926,787	+		PFLU_RS12965	0.37	-2.9
2,926,787	+		PFLU_RS12965	0.37	-1.1
2,926,788	-		PFLU_RS12965	0.37	-2.1
2,926,788	-		PFLU_RS12965	0.37	-0.8
2,926,788	-		PFLU_RS12965	0.37	-2.5
2,926,788	-		PFLU_RS12965	0.37	+0.2
2,927,045	+		PFLU_RS12965	0.58	-0.5
2,927,045	+		PFLU_RS12965	0.58	-0.1
2,927,045	+		PFLU_RS12965	0.58	-0.2
2,927,045	+		PFLU_RS12965	0.58	+0.8
2,927,045	+		PFLU_RS12965	0.58	-1.6
2,927,046	-		PFLU_RS12965	0.58	+0.5
2,927,046	-		PFLU_RS12965	0.58	+0.7
2,927,230	+		PFLU_RS12965	0.73	-2.1
2,927,230	+		PFLU_RS12965	0.73	-1.1
2,927,231	-		PFLU_RS12965	0.73	-1.6
2,927,269	+		PFLU_RS12965	0.76	-2.6
2,927,270	-		PFLU_RS12965	0.76	-2.7
2,927,270	-		PFLU_RS12965	0.76	-1.5
2,927,330	+		PFLU_RS12965	0.81	-0.9
2,927,330	+		PFLU_RS12965	0.81	-0.1
2,927,331	-		PFLU_RS12965	0.81	+1.5
2,927,439	-		PFLU_RS12965	0.90	-0.6
2,927,439	-		PFLU_RS12965	0.90	+1.1
2,927,439	-		PFLU_RS12965	0.90	+0.3
2,927,439	-		PFLU_RS12965	0.90	-0.1
2,927,598	+				+2.9
2,927,604	+				+0.4
2,927,605	-				-0.2
2,927,617	-				+1.5
2,927,642	+				+2.0
2,927,642	+				-0.8
2,927,643	-				+2.8
2,927,643	-				+1.7
2,927,643	-				+0.5
2,927,694	+		PFLU_RS12970	0.14	-3.1
2,927,694	+		PFLU_RS12970	0.14	+2.0
2,927,694	+		PFLU_RS12970	0.14	-0.7
2,927,695	-		PFLU_RS12970	0.14	-0.5
2,927,695	-		PFLU_RS12970	0.14	-1.6
2,927,810	+		PFLU_RS12970	0.42	-1.3
2,927,810	+		PFLU_RS12970	0.42	-1.8
2,927,810	+		PFLU_RS12970	0.42	-0.6
2,927,810	+		PFLU_RS12970	0.42	-1.5
2,927,923	+		PFLU_RS12970	0.69	-0.1
2,927,923	+		PFLU_RS12970	0.69	-1.5
2,928,037	+				-0.8
2,928,038	-				-0.1
2,928,048	+				+1.1
2,928,048	+				+1.0
2,928,048	+				-0.8
2,928,048	+				-1.8
2,928,048	+				+2.8
2,928,048	+				+1.5
2,928,048	+				+0.5
2,928,048	+				-0.5
2,928,049	-				+1.9
2,928,049	-				-0.8
2,928,049	-				+2.4
2,928,049	-				-1.9
2,928,049	-				+0.7
2,928,049	-				+1.5
2,928,049	-				-1.1
2,928,049	-				+0.9
2,928,049	-				-1.3
2,928,202	+				-0.3
2,928,202	+				-1.1
2,928,202	+				-1.9
2,928,203	-				-2.5
2,928,242	-		PFLU_RS12975	0.17	-1.8
2,928,242	-		PFLU_RS12975	0.17	-2.6
2,928,295	+		PFLU_RS12975	0.28	-1.9
2,928,295	+		PFLU_RS12975	0.28	+1.5
2,928,295	+		PFLU_RS12975	0.28	-1.5
2,928,296	-		PFLU_RS12975	0.28	+0.5
2,928,296	-		PFLU_RS12975	0.28	-0.8
2,928,382	+		PFLU_RS12975	0.46	-2.6
2,928,382	+		PFLU_RS12975	0.46	-0.1
2,928,382	+		PFLU_RS12975	0.46	-2.6
2,928,386	+		PFLU_RS12975	0.46	-0.5
2,928,386	+		PFLU_RS12975	0.46	-1.6
2,928,386	+		PFLU_RS12975	0.46	-0.8
2,928,386	+		PFLU_RS12975	0.46	-2.2
2,928,387	-		PFLU_RS12975	0.47	-2.6
2,928,387	-		PFLU_RS12975	0.47	-0.8
2,928,387	-		PFLU_RS12975	0.47	+0.2
2,928,387	-		PFLU_RS12975	0.47	-2.1
2,928,635	+				-1.6
2,928,635	+				-0.1
2,928,636	-				-1.5
2,928,650	+				-1.9
2,928,651	-				-0.5
2,928,651	-				-0.8
2,928,689	+				-1.5
2,928,689	+				-2.4
2,928,689	+				-1.5
2,928,689	+				-2.8
2,928,689	+				-1.6
2,928,690	-				-1.1
2,928,690	-				-0.5
2,928,731	+				-1.1
2,928,731	+				-1.9
2,928,731	+				-0.1
2,928,731	+				-0.8
2,928,731	+				-1.8
2,928,731	+				-1.3
2,928,731	+				-1.3
2,928,731	+				-1.8
2,928,731	+				+1.5
2,928,731	+				-2.6
2,928,732	-				-1.9
2,928,732	-				-0.5
2,928,732	-				-1.3
2,928,732	-				-2.6
2,928,732	-				-1.9
2,928,732	-				-1.3
2,928,732	-				+0.5
2,928,732	-				-0.8
2,928,732	-				-2.7
2,928,962	+		PFLU_RS12980	0.20	-0.1
2,928,963	-		PFLU_RS12980	0.20	-0.8
2,928,963	-		PFLU_RS12980	0.20	-1.8
2,928,963	-		PFLU_RS12980	0.20	+2.9