Experiment: p-Coumaric 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00110 and PFLU_RS00115 are separated by 159 nucleotides PFLU_RS00115 and PFLU_RS00120 overlap by 1 nucleotides PFLU_RS00120 and PFLU_RS00125 are separated by 51 nucleotides
PFLU_RS00110: PFLU_RS00110 - NADPH:quinone reductase, at 24,335 to 25,312
_RS00110
PFLU_RS00115: PFLU_RS00115 - oxygen-dependent coproporphyrinogen oxidase, at 25,472 to 26,404
_RS00115
PFLU_RS00120: PFLU_RS00120 - shikimate dehydrogenase, at 26,404 to 27,222
_RS00120
PFLU_RS00125: PFLU_RS00125 - SulP family inorganic anion transporter, at 27,274 to 28,842
_RS00125
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 24.507 kb on + strand, within PFLU_RS00110 at 24.507 kb on + strand, within PFLU_RS00110 at 24.507 kb on + strand, within PFLU_RS00110 at 24.507 kb on + strand, within PFLU_RS00110 at 24.507 kb on + strand, within PFLU_RS00110 at 24.507 kb on + strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.508 kb on - strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.534 kb on + strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.535 kb on - strand, within PFLU_RS00110 at 24.595 kb on + strand, within PFLU_RS00110 at 24.672 kb on + strand, within PFLU_RS00110 at 24.672 kb on + strand, within PFLU_RS00110 at 24.672 kb on + strand, within PFLU_RS00110 at 24.672 kb on + strand, within PFLU_RS00110 at 24.672 kb on + strand, within PFLU_RS00110 at 24.673 kb on - strand, within PFLU_RS00110 at 24.673 kb on - strand, within PFLU_RS00110 at 24.673 kb on - strand, within PFLU_RS00110 at 24.738 kb on + strand, within PFLU_RS00110 at 24.738 kb on + strand, within PFLU_RS00110 at 24.738 kb on + strand, within PFLU_RS00110 at 24.738 kb on + strand, within PFLU_RS00110 at 24.738 kb on + strand, within PFLU_RS00110 at 24.738 kb on + strand, within PFLU_RS00110 at 24.738 kb on + strand, within PFLU_RS00110 at 24.738 kb on + strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.739 kb on - strand, within PFLU_RS00110 at 24.906 kb on + strand, within PFLU_RS00110 at 24.906 kb on + strand, within PFLU_RS00110 at 24.907 kb on - strand, within PFLU_RS00110 at 24.907 kb on - strand, within PFLU_RS00110 at 24.907 kb on - strand, within PFLU_RS00110 at 24.924 kb on + strand, within PFLU_RS00110 at 24.925 kb on - strand, within PFLU_RS00110 at 24.925 kb on - strand, within PFLU_RS00110 at 24.925 kb on - strand, within PFLU_RS00110 at 24.925 kb on - strand, within PFLU_RS00110 at 24.925 kb on - strand, within PFLU_RS00110 at 25.030 kb on - strand, within PFLU_RS00110 at 25.030 kb on - strand, within PFLU_RS00110 at 25.030 kb on - strand, within PFLU_RS00110 at 25.053 kb on + strand, within PFLU_RS00110 at 25.054 kb on - strand, within PFLU_RS00110 at 25.054 kb on - strand, within PFLU_RS00110 at 25.159 kb on - strand, within PFLU_RS00110 at 25.159 kb on - strand, within PFLU_RS00110 at 25.176 kb on + strand, within PFLU_RS00110 at 25.176 kb on + strand, within PFLU_RS00110 at 25.176 kb on + strand, within PFLU_RS00110 at 25.176 kb on + strand, within PFLU_RS00110 at 25.176 kb on + strand, within PFLU_RS00110 at 25.177 kb on - strand, within PFLU_RS00110 at 25.177 kb on - strand, within PFLU_RS00110 at 25.177 kb on - strand, within PFLU_RS00110 at 25.177 kb on - strand, within PFLU_RS00110 at 25.251 kb on + strand at 25.251 kb on + strand at 25.252 kb on - strand at 25.252 kb on - strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.260 kb on + strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.261 kb on - strand at 25.301 kb on - strand at 25.301 kb on - strand at 25.349 kb on - strand at 25.359 kb on + strand at 25.359 kb on + strand at 25.359 kb on + strand at 25.360 kb on - strand at 25.360 kb on - strand at 25.360 kb on - strand at 25.360 kb on - strand at 25.360 kb on - strand at 25.360 kb on - strand at 25.445 kb on + strand at 25.445 kb on + strand at 25.445 kb on + strand at 25.446 kb on - strand at 25.446 kb on - strand at 25.446 kb on - strand at 26.380 kb on + strand at 26.413 kb on + strand at 26.413 kb on + strand at 26.413 kb on + strand at 26.413 kb on + strand at 27.220 kb on + strand at 27.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric 2 mM (C) remove 24,507 + PFLU_RS00110 0.18 -0.0 24,507 + PFLU_RS00110 0.18 +2.0 24,507 + PFLU_RS00110 0.18 -1.0 24,507 + PFLU_RS00110 0.18 -0.9 24,507 + PFLU_RS00110 0.18 -0.8 24,507 + PFLU_RS00110 0.18 +2.4 24,508 - PFLU_RS00110 0.18 +1.5 24,508 - PFLU_RS00110 0.18 +0.1 24,508 - PFLU_RS00110 0.18 +1.9 24,508 - PFLU_RS00110 0.18 -0.0 24,508 - PFLU_RS00110 0.18 -2.7 24,508 - PFLU_RS00110 0.18 -1.3 24,508 - PFLU_RS00110 0.18 +2.0 24,508 - PFLU_RS00110 0.18 +1.5 24,508 - PFLU_RS00110 0.18 -1.4 24,534 + PFLU_RS00110 0.20 -1.8 24,534 + PFLU_RS00110 0.20 +0.3 24,534 + PFLU_RS00110 0.20 +2.0 24,534 + PFLU_RS00110 0.20 -0.5 24,534 + PFLU_RS00110 0.20 -2.0 24,534 + PFLU_RS00110 0.20 -0.3 24,534 + PFLU_RS00110 0.20 -1.7 24,534 + PFLU_RS00110 0.20 +0.2 24,534 + PFLU_RS00110 0.20 +1.3 24,534 + PFLU_RS00110 0.20 -0.9 24,534 + PFLU_RS00110 0.20 -1.9 24,534 + PFLU_RS00110 0.20 -2.8 24,535 - PFLU_RS00110 0.20 -0.1 24,535 - PFLU_RS00110 0.20 -2.1 24,535 - PFLU_RS00110 0.20 +1.1 24,535 - PFLU_RS00110 0.20 -2.6 24,535 - PFLU_RS00110 0.20 -0.0 24,535 - PFLU_RS00110 0.20 +0.5 24,535 - PFLU_RS00110 0.20 +0.7 24,535 - PFLU_RS00110 0.20 +0.7 24,535 - PFLU_RS00110 0.20 -1.6 24,535 - PFLU_RS00110 0.20 -0.0 24,535 - PFLU_RS00110 0.20 +2.4 24,595 + PFLU_RS00110 0.27 +1.0 24,672 + PFLU_RS00110 0.34 +2.1 24,672 + PFLU_RS00110 0.34 -0.0 24,672 + PFLU_RS00110 0.34 +0.2 24,672 + PFLU_RS00110 0.34 +1.3 24,672 + PFLU_RS00110 0.34 +0.7 24,673 - PFLU_RS00110 0.35 +1.9 24,673 - PFLU_RS00110 0.35 -1.8 24,673 - PFLU_RS00110 0.35 -0.5 24,738 + PFLU_RS00110 0.41 +0.4 24,738 + PFLU_RS00110 0.41 -0.6 24,738 + PFLU_RS00110 0.41 -0.9 24,738 + PFLU_RS00110 0.41 -0.0 24,738 + PFLU_RS00110 0.41 +0.3 24,738 + PFLU_RS00110 0.41 +0.8 24,738 + PFLU_RS00110 0.41 -1.4 24,738 + PFLU_RS00110 0.41 -1.0 24,739 - PFLU_RS00110 0.41 -2.1 24,739 - PFLU_RS00110 0.41 -0.3 24,739 - PFLU_RS00110 0.41 -2.6 24,739 - PFLU_RS00110 0.41 -0.4 24,739 - PFLU_RS00110 0.41 +0.7 24,739 - PFLU_RS00110 0.41 -2.2 24,739 - PFLU_RS00110 0.41 +0.8 24,739 - PFLU_RS00110 0.41 -0.3 24,739 - PFLU_RS00110 0.41 +1.0 24,739 - PFLU_RS00110 0.41 +1.9 24,739 - PFLU_RS00110 0.41 -0.2 24,739 - PFLU_RS00110 0.41 -1.3 24,906 + PFLU_RS00110 0.58 -0.3 24,906 + PFLU_RS00110 0.58 -1.6 24,907 - PFLU_RS00110 0.58 -0.5 24,907 - PFLU_RS00110 0.58 -1.4 24,907 - PFLU_RS00110 0.58 +1.3 24,924 + PFLU_RS00110 0.60 +0.3 24,925 - PFLU_RS00110 0.60 -1.0 24,925 - PFLU_RS00110 0.60 -1.7 24,925 - PFLU_RS00110 0.60 +0.9 24,925 - PFLU_RS00110 0.60 -0.8 24,925 - PFLU_RS00110 0.60 +1.0 25,030 - PFLU_RS00110 0.71 -1.3 25,030 - PFLU_RS00110 0.71 +0.8 25,030 - PFLU_RS00110 0.71 -2.2 25,053 + PFLU_RS00110 0.73 +1.1 25,054 - PFLU_RS00110 0.74 -1.4 25,054 - PFLU_RS00110 0.74 -1.2 25,159 - PFLU_RS00110 0.84 +2.1 25,159 - PFLU_RS00110 0.84 +0.9 25,176 + PFLU_RS00110 0.86 -0.1 25,176 + PFLU_RS00110 0.86 +1.4 25,176 + PFLU_RS00110 0.86 +2.3 25,176 + PFLU_RS00110 0.86 -2.4 25,176 + PFLU_RS00110 0.86 +2.3 25,177 - PFLU_RS00110 0.86 +1.4 25,177 - PFLU_RS00110 0.86 -2.0 25,177 - PFLU_RS00110 0.86 -0.7 25,177 - PFLU_RS00110 0.86 -0.9 25,251 + -2.3 25,251 + +1.0 25,252 - +1.7 25,252 - +0.7 25,260 + +1.3 25,260 + +0.3 25,260 + -1.6 25,260 + -1.8 25,260 + -0.2 25,260 + +1.1 25,260 + -0.4 25,260 + +0.1 25,260 + +2.2 25,260 + +4.0 25,260 + +0.7 25,260 + +0.7 25,260 + -1.0 25,260 + -0.1 25,261 - +2.4 25,261 - +0.9 25,261 - +1.4 25,261 - +1.0 25,261 - -0.0 25,261 - +1.8 25,261 - -0.1 25,261 - +2.4 25,261 - -0.7 25,261 - +0.9 25,261 - -1.3 25,261 - -0.5 25,301 - -1.3 25,301 - -1.4 25,349 - -0.6 25,359 + +2.6 25,359 + +1.0 25,359 + +0.7 25,360 - -1.3 25,360 - +0.5 25,360 - +1.3 25,360 - +1.6 25,360 - -0.7 25,360 - +1.4 25,445 + +1.8 25,445 + +1.3 25,445 + +0.3 25,446 - -1.8 25,446 - +1.9 25,446 - +2.3 26,380 + +2.4 26,413 + -0.5 26,413 + -0.4 26,413 + +0.3 26,413 + +1.3 27,220 + -2.5 27,367 - -2.1
Or see this region's nucleotide sequence