Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4226

Experiment: SJC16_cps8_1MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4225 and BT4226 are separated by 13 nucleotidesBT4226 and BT4227 are separated by 118 nucleotides BT4225: BT4225 - hypothetical protein (NCBI ptt file), at 5,563,833 to 5,564,876 BT4225 BT4226: BT4226 - hypothetical protein (NCBI ptt file), at 5,564,890 to 5,565,972 BT4226 BT4227: BT4227 - hypothetical protein (NCBI ptt file), at 5,566,091 to 5,567,371 BT4227 Position (kb) 5564 5565 5566Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5563.920 kb on + strandat 5563.929 kb on - strandat 5563.938 kb on + strand, within BT4225at 5563.943 kb on - strand, within BT4225at 5563.949 kb on - strand, within BT4225at 5563.994 kb on + strand, within BT4225at 5563.994 kb on + strand, within BT4225at 5564.061 kb on + strand, within BT4225at 5564.062 kb on - strand, within BT4225at 5564.075 kb on + strand, within BT4225at 5564.088 kb on - strand, within BT4225at 5564.089 kb on + strand, within BT4225at 5564.096 kb on + strand, within BT4225at 5564.242 kb on - strand, within BT4225at 5564.273 kb on + strand, within BT4225at 5564.289 kb on + strand, within BT4225at 5564.321 kb on + strand, within BT4225at 5564.321 kb on + strand, within BT4225at 5564.334 kb on - strand, within BT4225at 5564.336 kb on + strand, within BT4225at 5564.338 kb on + strand, within BT4225at 5564.363 kb on + strand, within BT4225at 5564.363 kb on + strand, within BT4225at 5564.363 kb on + strand, within BT4225at 5564.388 kb on - strand, within BT4225at 5564.447 kb on + strand, within BT4225at 5564.535 kb on - strand, within BT4225at 5564.535 kb on - strand, within BT4225at 5564.536 kb on + strand, within BT4225at 5564.608 kb on - strand, within BT4225at 5564.657 kb on + strand, within BT4225at 5564.698 kb on - strand, within BT4225at 5564.698 kb on - strand, within BT4225at 5564.754 kb on + strand, within BT4225at 5564.754 kb on + strand, within BT4225at 5564.755 kb on - strand, within BT4225at 5564.835 kb on + strandat 5564.840 kb on + strandat 5564.841 kb on - strandat 5564.844 kb on + strandat 5564.854 kb on + strandat 5564.854 kb on + strandat 5565.005 kb on - strand, within BT4226at 5565.111 kb on + strand, within BT4226at 5565.112 kb on - strand, within BT4226at 5565.251 kb on + strand, within BT4226at 5565.273 kb on + strand, within BT4226at 5565.296 kb on + strand, within BT4226at 5565.320 kb on + strand, within BT4226at 5565.411 kb on + strand, within BT4226at 5565.499 kb on + strand, within BT4226at 5565.500 kb on - strand, within BT4226at 5565.500 kb on - strand, within BT4226at 5565.511 kb on + strand, within BT4226at 5565.514 kb on + strand, within BT4226at 5565.514 kb on + strand, within BT4226at 5565.515 kb on - strand, within BT4226at 5565.518 kb on + strand, within BT4226at 5565.553 kb on - strand, within BT4226at 5565.610 kb on + strand, within BT4226at 5565.610 kb on + strand, within BT4226at 5565.640 kb on + strand, within BT4226at 5565.679 kb on + strand, within BT4226at 5565.680 kb on - strand, within BT4226at 5565.680 kb on - strand, within BT4226at 5565.685 kb on + strand, within BT4226at 5565.686 kb on - strand, within BT4226at 5565.753 kb on + strand, within BT4226at 5565.753 kb on + strand, within BT4226at 5565.777 kb on + strand, within BT4226at 5565.803 kb on - strand, within BT4226at 5565.819 kb on + strand, within BT4226at 5565.819 kb on + strand, within BT4226at 5565.830 kb on + strand, within BT4226at 5565.849 kb on - strand, within BT4226at 5565.872 kb on + strandat 5565.889 kb on + strandat 5565.923 kb on - strandat 5565.923 kb on - strandat 5565.933 kb on + strandat 5565.933 kb on + strandat 5565.949 kb on + strandat 5565.954 kb on + strandat 5565.979 kb on + strandat 5566.023 kb on + strandat 5566.084 kb on + strandat 5566.130 kb on + strandat 5566.130 kb on + strandat 5566.135 kb on + strandat 5566.136 kb on - strandat 5566.149 kb on - strandat 5566.179 kb on - strandat 5566.196 kb on + strandat 5566.250 kb on - strand, within BT4227at 5566.315 kb on + strand, within BT4227at 5566.324 kb on + strand, within BT4227at 5566.449 kb on + strand, within BT4227at 5566.506 kb on + strand, within BT4227at 5566.531 kb on + strand, within BT4227at 5566.563 kb on + strand, within BT4227at 5566.563 kb on + strand, within BT4227at 5566.563 kb on + strand, within BT4227at 5566.563 kb on + strand, within BT4227at 5566.564 kb on - strandat 5566.593 kb on + strand, within BT4227at 5566.624 kb on - strand, within BT4227at 5566.631 kb on + strand, within BT4227at 5566.695 kb on + strand, within BT4227at 5566.695 kb on + strand, within BT4227at 5566.696 kb on - strand, within BT4227at 5566.699 kb on + strand, within BT4227at 5566.699 kb on + strand, within BT4227at 5566.699 kb on + strand, within BT4227at 5566.700 kb on - strand, within BT4227at 5566.719 kb on + strand, within BT4227at 5566.720 kb on - strand, within BT4227at 5566.720 kb on - strand, within BT4227at 5566.720 kb on - strand, within BT4227at 5566.720 kb on - strand, within BT4227at 5566.751 kb on + strand, within BT4227at 5566.769 kb on + strand, within BT4227at 5566.770 kb on - strand, within BT4227at 5566.819 kb on + strand, within BT4227at 5566.832 kb on - strand, within BT4227at 5566.851 kb on - strand, within BT4227at 5566.871 kb on - strand, within BT4227at 5566.933 kb on - strand, within BT4227at 5566.945 kb on - strand, within BT4227

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Per-strain Table

Position Strand Gene LocusTag Fraction SJC16_cps8_1MOI
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5,563,920 + -2.6
5,563,929 - -0.7
5,563,938 + BT4225 0.10 -1.5
5,563,943 - BT4225 0.11 +1.6
5,563,949 - BT4225 0.11 -1.0
5,563,994 + BT4225 0.15 -0.3
5,563,994 + BT4225 0.15 -1.2
5,564,061 + BT4225 0.22 -0.7
5,564,062 - BT4225 0.22 -1.8
5,564,075 + BT4225 0.23 -1.7
5,564,088 - BT4225 0.24 -2.0
5,564,089 + BT4225 0.25 -1.0
5,564,096 + BT4225 0.25 +0.4
5,564,242 - BT4225 0.39 -2.7
5,564,273 + BT4225 0.42 -0.4
5,564,289 + BT4225 0.44 +0.2
5,564,321 + BT4225 0.47 -2.0
5,564,321 + BT4225 0.47 +0.6
5,564,334 - BT4225 0.48 +0.2
5,564,336 + BT4225 0.48 -1.0
5,564,338 + BT4225 0.48 -1.6
5,564,363 + BT4225 0.51 +0.2
5,564,363 + BT4225 0.51 -1.5
5,564,363 + BT4225 0.51 -1.6
5,564,388 - BT4225 0.53 -3.1
5,564,447 + BT4225 0.59 -0.8
5,564,535 - BT4225 0.67 -0.4
5,564,535 - BT4225 0.67 -1.6
5,564,536 + BT4225 0.67 -0.3
5,564,608 - BT4225 0.74 -1.0
5,564,657 + BT4225 0.79 -2.8
5,564,698 - BT4225 0.83 -2.0
5,564,698 - BT4225 0.83 -3.0
5,564,754 + BT4225 0.88 -0.1
5,564,754 + BT4225 0.88 +0.6
5,564,755 - BT4225 0.88 -2.0
5,564,835 + -1.8
5,564,840 + -0.6
5,564,841 - -1.4
5,564,844 + -4.4
5,564,854 + -1.2
5,564,854 + -1.2
5,565,005 - BT4226 0.11 +2.4
5,565,111 + BT4226 0.20 -0.6
5,565,112 - BT4226 0.20 +1.2
5,565,251 + BT4226 0.33 +0.4
5,565,273 + BT4226 0.35 -2.4
5,565,296 + BT4226 0.37 -0.7
5,565,320 + BT4226 0.40 -0.4
5,565,411 + BT4226 0.48 -1.0
5,565,499 + BT4226 0.56 +0.2
5,565,500 - BT4226 0.56 +2.3
5,565,500 - BT4226 0.56 -0.0
5,565,511 + BT4226 0.57 -0.0
5,565,514 + BT4226 0.58 +1.0
5,565,514 + BT4226 0.58 +1.0
5,565,515 - BT4226 0.58 -0.5
5,565,518 + BT4226 0.58 -2.5
5,565,553 - BT4226 0.61 -1.9
5,565,610 + BT4226 0.66 -0.5
5,565,610 + BT4226 0.66 -0.6
5,565,640 + BT4226 0.69 -0.0
5,565,679 + BT4226 0.73 -3.2
5,565,680 - BT4226 0.73 +1.0
5,565,680 - BT4226 0.73 -1.0
5,565,685 + BT4226 0.73 -2.0
5,565,686 - BT4226 0.73 -2.6
5,565,753 + BT4226 0.80 +1.3
5,565,753 + BT4226 0.80 -1.1
5,565,777 + BT4226 0.82 -1.4
5,565,803 - BT4226 0.84 +2.2
5,565,819 + BT4226 0.86 -0.4
5,565,819 + BT4226 0.86 +1.4
5,565,830 + BT4226 0.87 -1.8
5,565,849 - BT4226 0.89 +0.6
5,565,872 + -2.7
5,565,889 + -0.5
5,565,923 - +1.3
5,565,923 - -1.9
5,565,933 + -1.7
5,565,933 + -1.2
5,565,949 + +0.1
5,565,954 + -0.6
5,565,979 + +0.2
5,566,023 + -0.6
5,566,084 + -0.6
5,566,130 + -2.6
5,566,130 + -0.4
5,566,135 + +1.3
5,566,136 - -0.6
5,566,149 - -2.0
5,566,179 - +1.0
5,566,196 + -0.8
5,566,250 - BT4227 0.12 -0.9
5,566,315 + BT4227 0.17 -1.4
5,566,324 + BT4227 0.18 -0.4
5,566,449 + BT4227 0.28 -1.8
5,566,506 + BT4227 0.32 +2.9
5,566,531 + BT4227 0.34 +2.3
5,566,563 + BT4227 0.37 +0.4
5,566,563 + BT4227 0.37 -0.0
5,566,563 + BT4227 0.37 -0.5
5,566,563 + BT4227 0.37 -0.6
5,566,564 - -1.8
5,566,593 + BT4227 0.39 -2.5
5,566,624 - BT4227 0.42 +0.3
5,566,631 + BT4227 0.42 +0.2
5,566,695 + BT4227 0.47 -0.0
5,566,695 + BT4227 0.47 +0.6
5,566,696 - BT4227 0.47 -0.2
5,566,699 + BT4227 0.47 -1.8
5,566,699 + BT4227 0.47 -0.4
5,566,699 + BT4227 0.47 -2.2
5,566,700 - BT4227 0.48 -1.7
5,566,719 + BT4227 0.49 +1.2
5,566,720 - BT4227 0.49 -2.3
5,566,720 - BT4227 0.49 -0.8
5,566,720 - BT4227 0.49 -1.6
5,566,720 - BT4227 0.49 -1.6
5,566,751 + BT4227 0.52 -2.4
5,566,769 + BT4227 0.53 -2.0
5,566,770 - BT4227 0.53 -1.2
5,566,819 + BT4227 0.57 +1.4
5,566,832 - BT4227 0.58 +1.2
5,566,851 - BT4227 0.59 -0.4
5,566,871 - BT4227 0.61 -1.4
5,566,933 - BT4227 0.66 -1.2
5,566,945 - BT4227 0.67 -0.9

Or see this region's nucleotide sequence