Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4057

Experiment: SJC16_cps8_1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SJC16_cps8_1MOI
5,287,201	+		BT4056	0.44	-0.6
5,287,217	-		BT4056	0.45	-2.0
5,287,299	+		BT4056	0.52	-0.9
5,287,304	-		BT4056	0.53	-3.0
5,287,304	-		BT4056	0.53	-1.3
5,287,353	-		BT4056	0.57	-1.9
5,287,353	-		BT4056	0.57	+1.3
5,287,393	-		BT4056	0.60	-2.8
5,287,393	-		BT4056	0.60	-1.5
5,287,410	-		BT4056	0.61	-1.3
5,287,415	-		BT4056	0.62	-1.6
5,287,467	+		BT4056	0.66	-0.0
5,287,549	-		BT4056	0.73	-0.0
5,287,567	-		BT4056	0.74	-0.0
5,287,601	+		BT4056	0.77	-2.5
5,287,602	-		BT4056	0.77	+0.7
5,287,602	-		BT4056	0.77	+0.7
5,287,602	-		BT4056	0.77	+1.6
5,287,620	-		BT4056	0.79	-2.4
5,287,743	+		BT4056	0.89	-2.2
5,287,755	+		BT4056	0.90	+0.6
5,287,755	+		BT4056	0.90	-1.7
5,287,756	-		BT4056	0.90	-0.2
5,287,756	-		BT4056	0.90	-0.8
5,287,761	-				-1.2
5,287,884	+				-1.3
5,287,885	-				-0.2
5,287,885	-				-1.0
5,287,907	+				+1.0
5,287,907	+				-1.6
5,287,908	-				+2.3
5,287,915	-				-0.7
5,287,978	+				-2.0
5,287,998	-				+2.3
5,287,998	-				-0.9
5,288,025	+				-1.8
5,288,064	-				-2.7
5,288,083	-				-1.3
5,288,085	+				-0.0
5,288,085	+				-1.2
5,288,087	+				-1.6
5,288,132	-				-0.4
5,288,168	+				+0.6
5,288,174	+				-2.6
5,288,198	-				+1.0
5,288,198	-				-0.2
5,288,198	-				-1.2
5,288,233	-				+0.6
5,288,233	-				-1.7
5,288,280	-				+0.5
5,288,535	-		BT4057	0.13	-0.5
5,288,574	+		BT4057	0.14	-1.3
5,288,574	+		BT4057	0.14	-1.8
5,288,576	+		BT4057	0.14	+1.0
5,288,577	-		BT4057	0.14	-2.7
5,288,577	-		BT4057	0.14	-2.8
5,288,579	-		BT4057	0.14	-0.8
5,288,617	+		BT4057	0.16	-1.2
5,288,628	-		BT4057	0.16	-1.7
5,288,639	-		BT4057	0.17	-0.4
5,288,680	-		BT4057	0.18	-1.3
5,288,704	-		BT4057	0.19	-1.6
5,288,704	-		BT4057	0.19	-2.0
5,288,704	-		BT4057	0.19	+1.0
5,288,706	-		BT4057	0.19	-1.8
5,288,880	-		BT4057	0.25	+1.0
5,288,955	-		BT4057	0.28	-2.3
5,288,962	+		BT4057	0.28	+1.0
5,288,963	-		BT4057	0.28	-2.8
5,289,030	-		BT4057	0.31	-0.0
5,289,038	+		BT4057	0.31	+0.2
5,289,039	-		BT4057	0.31	-1.2
5,289,114	-		BT4057	0.34	-3.7
5,289,121	+		BT4057	0.34	-1.8
5,289,122	-		BT4057	0.34	-1.8
5,289,126	+		BT4057	0.34	-2.2
5,289,128	+		BT4057	0.34	-1.2
5,289,130	+		BT4057	0.34	-2.2
5,289,130	+		BT4057	0.34	-0.9
5,289,130	+		BT4057	0.34	-1.2
5,289,174	+		BT4057	0.36	+1.7
5,289,175	-		BT4057	0.36	-1.4
5,289,177	-		BT4057	0.36	-0.6
5,289,177	-		BT4057	0.36	-0.4
5,289,236	+		BT4057	0.38	-2.0
5,289,238	+		BT4057	0.38	-1.0
5,289,259	+		BT4057	0.39	-3.0
5,289,318	+		BT4057	0.41	-2.6
5,289,319	-		BT4057	0.41	-1.3
5,289,357	+		BT4057	0.43	-0.7
5,289,357	+		BT4057	0.43	-1.3
5,289,401	-		BT4057	0.44	-1.2
5,289,440	+		BT4057	0.46	-1.8
5,289,471	-		BT4057	0.47	-0.4
5,289,619	+		BT4057	0.52	-2.1
5,289,629	+		BT4057	0.52	-3.3
5,289,705	+		BT4057	0.55	+0.6
5,289,705	+		BT4057	0.55	-1.0
5,289,734	+		BT4057	0.56	-1.0
5,289,734	+		BT4057	0.56	-2.3
5,289,735	-		BT4057	0.56	+0.2
5,289,735	-		BT4057	0.56	-1.3
5,289,736	+		BT4057	0.56	-2.2
5,289,737	-		BT4057	0.56	+2.4
5,289,737	-		BT4057	0.56	-1.2
5,289,739	-		BT4057	0.56	-3.3
5,289,739	-		BT4057	0.56	-0.0
5,289,739	-		BT4057	0.56	-3.5
5,289,740	+		BT4057	0.56	-1.9
5,289,786	+		BT4057	0.58	-2.6
5,289,787	-		BT4057	0.58	-0.0
5,289,807	-		BT4057	0.59	-0.0
5,289,807	-		BT4057	0.59	-2.9
5,289,836	+		BT4057	0.60	-1.0
5,289,876	+		BT4057	0.61	+0.4
5,289,925	-		BT4057	0.63	-2.1
5,289,925	-		BT4057	0.63	-2.4
5,289,925	-		BT4057	0.63	+0.1
5,289,933	-		BT4057	0.63	-1.1
5,289,968	+		BT4057	0.65	-1.0
5,289,997	-		BT4057	0.66	+1.3
5,290,002	-		BT4057	0.66	-1.4
5,290,028	+		BT4057	0.67	-0.0
5,290,095	+		BT4057	0.69	-1.0
5,290,133	+		BT4057	0.71	+1.5
5,290,134	-		BT4057	0.71	-2.9
5,290,134	-		BT4057	0.71	+0.2
5,290,142	-		BT4057	0.71	-0.0
5,290,142	-		BT4057	0.71	-1.7
5,290,197	+		BT4057	0.73	-1.0
5,290,202	+		BT4057	0.73	-1.3
5,290,202	+		BT4057	0.73	-0.4
5,290,202	+		BT4057	0.73	-0.6
5,290,368	-		BT4057	0.79	-0.4
5,290,387	-		BT4057	0.80	-1.0
5,290,387	-		BT4057	0.80	-0.0
5,290,424	-		BT4057	0.81	+0.4
5,290,455	-		BT4057	0.82	-1.2
5,290,496	-		BT4057	0.84	-1.0
5,290,496	-		BT4057	0.84	-3.7
5,290,506	-		BT4057	0.84	-1.5
5,290,520	+		BT4057	0.85	-0.8
5,290,521	-		BT4057	0.85	-2.3
5,290,602	-		BT4057	0.88	-0.0
5,290,676	+				-0.9
5,290,677	-				-2.0
5,290,677	-				-1.8
5,290,691	+				+2.3
5,290,691	+				+0.6
5,290,692	-				-1.2
5,290,719	+				+1.6
5,290,719	+				+0.2
5,290,724	-				-1.0
5,290,766	+				-1.7
5,290,801	+				+0.4
5,290,908	-				+1.0
5,290,997	-				-1.0
5,291,008	+				-1.6
5,291,028	-				-0.6
5,291,029	+				-0.6
5,291,030	-				-0.0
5,291,030	-				-0.1
5,291,034	+				+0.8
5,291,035	-				-1.2
5,291,091	+				-0.2
5,291,141	+		BT4058	0.10	-0.0
5,291,141	+		BT4058	0.10	-2.4
5,291,141	+		BT4058	0.10	-2.6
5,291,142	-		BT4058	0.10	-1.0
5,291,142	-		BT4058	0.10	+1.3
5,291,142	-		BT4058	0.10	+0.5
5,291,166	-		BT4058	0.12	-1.6
5,291,169	-		BT4058	0.12	+0.8
5,291,171	+		BT4058	0.12	-2.0
5,291,171	+		BT4058	0.12	-0.0
5,291,172	-		BT4058	0.12	-0.3
5,291,207	-		BT4058	0.15	-0.8
5,291,248	-		BT4058	0.18	-0.4
5,291,284	-		BT4058	0.20	-1.7
5,291,307	+		BT4058	0.22	+0.8
5,291,354	+		BT4058	0.25	-0.6
5,291,384	-		BT4058	0.27	-0.8
5,291,389	+		BT4058	0.27	+1.7
5,291,389	+		BT4058	0.27	-0.2
5,291,410	+		BT4058	0.29	-3.2
5,291,410	+		BT4058	0.29	+0.2
5,291,435	-		BT4058	0.31	-2.0
5,291,441	-		BT4058	0.31	+0.2
5,291,441	-		BT4058	0.31	-1.0
5,291,441	-		BT4058	0.31	+0.8
5,291,441	-		BT4058	0.31	+1.4
5,291,444	+		BT4058	0.31	-1.0
5,291,444	+		BT4058	0.31	+4.3
5,291,444	+		BT4058	0.31	-0.7
5,291,499	+		BT4058	0.35	-1.3
5,291,499	+		BT4058	0.35	-3.1
5,291,499	+		BT4058	0.35	-1.5
5,291,501	+		BT4058	0.35	-1.5
5,291,502	-		BT4058	0.35	-1.2
5,291,563	+		BT4058	0.40	-1.8
5,291,567	-		BT4058	0.40	-0.8
5,291,609	-		BT4058	0.43	+0.1
5,291,627	-		BT4058	0.44	-1.8
5,291,627	-		BT4058	0.44	-2.8
5,291,801	-		BT4058	0.56	-2.1
5,291,801	-		BT4058	0.56	-1.0
5,291,836	-		BT4058	0.58	+0.6
5,291,836	-		BT4058	0.58	+3.0
5,291,858	+		BT4058	0.60	-0.7
5,291,879	+		BT4058	0.61	+0.7
5,291,903	-		BT4058	0.63	-3.0
5,291,936	+		BT4058	0.65	-0.5
5,291,936	+		BT4058	0.65	-1.9
5,291,936	+		BT4058	0.65	+0.6
5,291,937	-		BT4058	0.65	+0.1