Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01515

Experiment: p-Coumaric 2 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01510 and PFLU_RS01515 are separated by 176 nucleotidesPFLU_RS01515 and PFLU_RS01520 are separated by 241 nucleotides PFLU_RS01510: PFLU_RS01510 - cell division protein FtsQ, at 340,576 to 341,700 _RS01510 PFLU_RS01515: PFLU_RS01515 - cellulose synthase operon protein YhjQ, at 341,877 to 342,812 _RS01515 PFLU_RS01520: PFLU_RS01520 - methyltransferase, at 343,054 to 344,241 _RS01520 Position (kb) 341 342 343Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 340.897 kb on - strand, within PFLU_RS01510at 340.996 kb on - strand, within PFLU_RS01510at 340.996 kb on - strand, within PFLU_RS01510at 341.176 kb on + strand, within PFLU_RS01510at 341.176 kb on + strand, within PFLU_RS01510at 341.428 kb on - strand, within PFLU_RS01510at 341.428 kb on - strand, within PFLU_RS01510at 341.496 kb on + strand, within PFLU_RS01510at 341.594 kb on - strandat 341.594 kb on - strandat 341.594 kb on - strandat 341.594 kb on - strandat 341.629 kb on - strandat 341.629 kb on - strandat 341.629 kb on - strandat 341.629 kb on - strandat 341.750 kb on + strandat 341.849 kb on + strandat 341.850 kb on - strandat 341.885 kb on + strandat 341.885 kb on + strandat 341.885 kb on + strandat 341.886 kb on - strandat 341.886 kb on - strandat 341.886 kb on - strandat 341.886 kb on - strandat 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.410 kb on + strand, within PFLU_RS01515at 342.440 kb on + strand, within PFLU_RS01515at 342.441 kb on - strand, within PFLU_RS01515at 342.441 kb on - strand, within PFLU_RS01515at 342.447 kb on + strand, within PFLU_RS01515at 342.448 kb on - strand, within PFLU_RS01515at 342.673 kb on + strand, within PFLU_RS01515at 342.674 kb on - strand, within PFLU_RS01515at 342.674 kb on - strand, within PFLU_RS01515at 342.797 kb on + strandat 342.810 kb on + strandat 342.810 kb on + strandat 342.810 kb on + strandat 342.810 kb on + strandat 342.811 kb on - strandat 342.822 kb on + strandat 342.823 kb on - strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.977 kb on - strandat 342.981 kb on + strandat 342.981 kb on + strandat 342.981 kb on + strandat 342.981 kb on + strandat 342.982 kb on - strandat 342.982 kb on - strandat 342.982 kb on - strandat 343.021 kb on + strandat 343.130 kb on + strandat 343.131 kb on - strandat 343.174 kb on + strand, within PFLU_RS01520at 343.174 kb on + strand, within PFLU_RS01520at 343.174 kb on + strand, within PFLU_RS01520at 343.174 kb on + strand, within PFLU_RS01520at 343.175 kb on - strand, within PFLU_RS01520at 343.175 kb on - strand, within PFLU_RS01520at 343.175 kb on - strand, within PFLU_RS01520at 343.175 kb on - strand, within PFLU_RS01520at 343.247 kb on + strand, within PFLU_RS01520at 343.247 kb on + strand, within PFLU_RS01520at 343.247 kb on + strand, within PFLU_RS01520at 343.248 kb on - strand, within PFLU_RS01520at 343.248 kb on - strand, within PFLU_RS01520at 343.248 kb on - strand, within PFLU_RS01520at 343.248 kb on - strand, within PFLU_RS01520at 343.255 kb on + strand, within PFLU_RS01520at 343.316 kb on + strand, within PFLU_RS01520at 343.316 kb on + strand, within PFLU_RS01520at 343.316 kb on + strand, within PFLU_RS01520at 343.317 kb on - strand, within PFLU_RS01520at 343.370 kb on + strand, within PFLU_RS01520at 343.370 kb on + strand, within PFLU_RS01520at 343.370 kb on + strand, within PFLU_RS01520at 343.371 kb on - strand, within PFLU_RS01520at 343.550 kb on + strand, within PFLU_RS01520at 343.551 kb on - strand, within PFLU_RS01520at 343.551 kb on - strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.575 kb on - strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric 2 mM (C)
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340,897 - PFLU_RS01510 0.29 -0.7
340,996 - PFLU_RS01510 0.37 +1.3
340,996 - PFLU_RS01510 0.37 +1.9
341,176 + PFLU_RS01510 0.53 +4.1
341,176 + PFLU_RS01510 0.53 +0.1
341,428 - PFLU_RS01510 0.76 +2.7
341,428 - PFLU_RS01510 0.76 +0.6
341,496 + PFLU_RS01510 0.82 +1.5
341,594 - -0.6
341,594 - +1.7
341,594 - +1.2
341,594 - +1.3
341,629 - -1.2
341,629 - +1.1
341,629 - -1.3
341,629 - -1.2
341,750 + -2.7
341,849 + -0.6
341,850 - +1.1
341,885 + -0.9
341,885 + +1.8
341,885 + +1.8
341,886 - +1.0
341,886 - -0.6
341,886 - +1.7
341,886 - +0.4
342,104 + PFLU_RS01515 0.24 -0.4
342,104 + PFLU_RS01515 0.24 +0.1
342,104 + PFLU_RS01515 0.24 -0.3
342,104 + PFLU_RS01515 0.24 -1.3
342,104 + PFLU_RS01515 0.24 +0.7
342,104 + PFLU_RS01515 0.24 +1.7
342,105 - PFLU_RS01515 0.24 -1.1
342,105 - PFLU_RS01515 0.24 -0.6
342,105 - PFLU_RS01515 0.24 +0.0
342,105 - PFLU_RS01515 0.24 +1.7
342,105 - PFLU_RS01515 0.24 -2.3
342,410 + PFLU_RS01515 0.57 +0.3
342,440 + PFLU_RS01515 0.60 +0.6
342,441 - PFLU_RS01515 0.60 -1.6
342,441 - PFLU_RS01515 0.60 -1.4
342,447 + PFLU_RS01515 0.61 -0.1
342,448 - PFLU_RS01515 0.61 +0.3
342,673 + PFLU_RS01515 0.85 -1.6
342,674 - PFLU_RS01515 0.85 -0.6
342,674 - PFLU_RS01515 0.85 -1.7
342,797 + -2.6
342,810 + -0.2
342,810 + -0.6
342,810 + +2.4
342,810 + +0.8
342,811 - +1.7
342,822 + +1.3
342,823 - +1.5
342,844 + -0.7
342,844 + +1.3
342,844 + -0.1
342,844 + -0.6
342,844 + -2.3
342,844 + -1.1
342,844 + +0.3
342,844 + +2.4
342,844 + +2.4
342,845 - -2.3
342,845 - -1.7
342,845 - +1.3
342,845 - -1.6
342,845 - -0.3
342,845 - -2.5
342,845 - +1.1
342,845 - +1.1
342,845 - -0.5
342,845 - +1.3
342,977 - -0.7
342,981 + -0.6
342,981 + -0.1
342,981 + -0.3
342,981 + -1.4
342,982 - +0.8
342,982 - -0.3
342,982 - +0.6
343,021 + -0.1
343,130 + -1.7
343,131 - -1.6
343,174 + PFLU_RS01520 0.10 -1.1
343,174 + PFLU_RS01520 0.10 +1.4
343,174 + PFLU_RS01520 0.10 -1.7
343,174 + PFLU_RS01520 0.10 +1.6
343,175 - PFLU_RS01520 0.10 -1.2
343,175 - PFLU_RS01520 0.10 -0.3
343,175 - PFLU_RS01520 0.10 -2.6
343,175 - PFLU_RS01520 0.10 -2.0
343,247 + PFLU_RS01520 0.16 +1.8
343,247 + PFLU_RS01520 0.16 +1.7
343,247 + PFLU_RS01520 0.16 -1.8
343,248 - PFLU_RS01520 0.16 -0.3
343,248 - PFLU_RS01520 0.16 -0.1
343,248 - PFLU_RS01520 0.16 -0.7
343,248 - PFLU_RS01520 0.16 +1.1
343,255 + PFLU_RS01520 0.17 -0.2
343,316 + PFLU_RS01520 0.22 -1.8
343,316 + PFLU_RS01520 0.22 +2.5
343,316 + PFLU_RS01520 0.22 -1.2
343,317 - PFLU_RS01520 0.22 -2.7
343,370 + PFLU_RS01520 0.27 +0.7
343,370 + PFLU_RS01520 0.27 +0.9
343,370 + PFLU_RS01520 0.27 -0.1
343,371 - PFLU_RS01520 0.27 -1.3
343,550 + PFLU_RS01520 0.42 -0.1
343,551 - PFLU_RS01520 0.42 -3.1
343,551 - PFLU_RS01520 0.42 -0.3
343,574 + PFLU_RS01520 0.44 +0.1
343,574 + PFLU_RS01520 0.44 +1.5
343,574 + PFLU_RS01520 0.44 +1.3
343,574 + PFLU_RS01520 0.44 -2.4
343,574 + PFLU_RS01520 0.44 +1.0
343,575 - PFLU_RS01520 0.44 +2.5
343,636 + PFLU_RS01520 0.49 +1.0
343,636 + PFLU_RS01520 0.49 -1.4
343,636 + PFLU_RS01520 0.49 +2.0
343,636 + PFLU_RS01520 0.49 +0.7
343,636 + PFLU_RS01520 0.49 +2.3
343,636 + PFLU_RS01520 0.49 -0.9
343,636 + PFLU_RS01520 0.49 +0.2
343,636 + PFLU_RS01520 0.49 +0.5
343,636 + PFLU_RS01520 0.49 -0.9
343,636 + PFLU_RS01520 0.49 -0.7
343,637 - PFLU_RS01520 0.49 +0.7
343,637 - PFLU_RS01520 0.49 +0.4
343,637 - PFLU_RS01520 0.49 -0.4
343,637 - PFLU_RS01520 0.49 +0.8
343,637 - PFLU_RS01520 0.49 +0.9
343,637 - PFLU_RS01520 0.49 -0.7
343,637 - PFLU_RS01520 0.49 +0.1
343,637 - PFLU_RS01520 0.49 +2.5
343,637 - PFLU_RS01520 0.49 -2.3
343,637 - PFLU_RS01520 0.49 -0.9
343,637 - PFLU_RS01520 0.49 +2.5
343,637 - PFLU_RS01520 0.49 -0.0
343,785 - PFLU_RS01520 0.62 -0.3
343,785 - PFLU_RS01520 0.62 +0.4
343,785 - PFLU_RS01520 0.62 -0.9
343,785 - PFLU_RS01520 0.62 -0.6
343,785 - PFLU_RS01520 0.62 +1.5
343,785 - PFLU_RS01520 0.62 -0.9
343,785 - PFLU_RS01520 0.62 -1.1

Or see this region's nucleotide sequence