Experiment: SJC15_cps8_1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0599 and BT0600 are separated by 4 nucleotides BT0600 and BT0601 are separated by 199 nucleotides
BT0599: BT0599 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 739,128 to 740,444
BT0599
BT0600: BT0600 - nucleotide sugar epimerase (NCBI ptt file), at 740,449 to 741,513
BT0600
BT0601: BT0601 - UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file), at 741,713 to 742,924
BT0601
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 739.483 kb on + strand, within BT0599 at 739.533 kb on + strand, within BT0599 at 739.611 kb on - strand, within BT0599 at 739.775 kb on + strand, within BT0599 at 739.829 kb on + strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 740.072 kb on + strand, within BT0599 at 740.108 kb on + strand, within BT0599 at 740.122 kb on - strand, within BT0599 at 740.418 kb on - strand at 740.458 kb on + strand at 740.594 kb on - strand, within BT0600 at 740.594 kb on - strand, within BT0600 at 740.753 kb on + strand, within BT0600 at 740.785 kb on - strand, within BT0600 at 740.820 kb on - strand, within BT0600 at 740.857 kb on + strand, within BT0600 at 740.857 kb on + strand, within BT0600 at 740.871 kb on + strand, within BT0600 at 740.902 kb on + strand, within BT0600 at 740.953 kb on - strand, within BT0600 at 740.970 kb on - strand, within BT0600 at 741.119 kb on - strand, within BT0600 at 741.145 kb on + strand, within BT0600 at 741.168 kb on + strand, within BT0600 at 741.242 kb on + strand, within BT0600 at 741.245 kb on - strand, within BT0600 at 741.246 kb on + strand, within BT0600 at 741.247 kb on - strand, within BT0600 at 741.499 kb on - strand at 741.543 kb on - strand at 741.676 kb on - strand at 741.819 kb on + strand at 741.820 kb on - strand at 741.888 kb on - strand, within BT0601 at 742.098 kb on - strand, within BT0601 at 742.217 kb on + strand, within BT0601 at 742.250 kb on + strand, within BT0601 at 742.250 kb on + strand, within BT0601 at 742.253 kb on - strand, within BT0601 at 742.258 kb on - strand, within BT0601 at 742.262 kb on - strand, within BT0601 at 742.309 kb on - strand, within BT0601 at 742.421 kb on - strand, within BT0601 at 742.464 kb on + strand, within BT0601 at 742.464 kb on + strand, within BT0601 at 742.465 kb on - strand, within BT0601 at 742.471 kb on + strand, within BT0601
Per-strain Table
Position Strand Gene LocusTag Fraction SJC15_cps8_1MOI remove 739,483 + BT0599 0.27 +0.2 739,533 + BT0599 0.31 +0.2 739,611 - BT0599 0.37 +0.3 739,775 + BT0599 0.49 -1.8 739,829 + BT0599 0.53 -0.6 739,833 - BT0599 0.54 -2.5 739,833 - BT0599 0.54 +0.3 739,878 + BT0599 0.57 +1.2 739,878 + BT0599 0.57 -0.8 740,072 + BT0599 0.72 -0.2 740,108 + BT0599 0.74 -1.1 740,122 - BT0599 0.75 +1.2 740,418 - +1.2 740,458 + -1.8 740,594 - BT0600 0.14 -2.3 740,594 - BT0600 0.14 -1.3 740,753 + BT0600 0.29 -1.1 740,785 - BT0600 0.32 -1.6 740,820 - BT0600 0.35 -0.4 740,857 + BT0600 0.38 -1.0 740,857 + BT0600 0.38 -1.0 740,871 + BT0600 0.40 -2.3 740,902 + BT0600 0.43 -0.4 740,953 - BT0600 0.47 -1.4 740,970 - BT0600 0.49 -3.1 741,119 - BT0600 0.63 -1.4 741,145 + BT0600 0.65 +1.2 741,168 + BT0600 0.68 -1.3 741,242 + BT0600 0.74 -1.3 741,245 - BT0600 0.75 -3.4 741,246 + BT0600 0.75 -0.4 741,247 - BT0600 0.75 -1.6 741,499 - +0.5 741,543 - -2.1 741,676 - -1.6 741,819 + -0.8 741,820 - +0.9 741,888 - BT0601 0.14 -0.6 742,098 - BT0601 0.32 -0.4 742,217 + BT0601 0.42 -1.2 742,250 + BT0601 0.44 +0.2 742,250 + BT0601 0.44 -0.4 742,253 - BT0601 0.45 +0.4 742,258 - BT0601 0.45 +0.6 742,262 - BT0601 0.45 -1.8 742,309 - BT0601 0.49 -1.8 742,421 - BT0601 0.58 -1.4 742,464 + BT0601 0.62 -3.1 742,464 + BT0601 0.62 -2.3 742,465 - BT0601 0.62 -0.4 742,471 + BT0601 0.63 -3.7
Or see this region's nucleotide sequence