Experiment: SJC15_cps8_1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0150 and BT0151 are separated by 97 nucleotides BT0151 and BT0152 are separated by 26 nucleotides BT0152 and BT0153 are separated by 364 nucleotides
BT0150: BT0150 - putative ferric aerobactin receptor (NCBI ptt file), at 153,863 to 156,241
BT0150
BT0151: BT0151 - hypothetical protein (NCBI ptt file), at 156,339 to 156,773
BT0151
BT0152: BT0152 - acetyl esterase (acetylxylosidase) (NCBI ptt file), at 156,800 to 157,618
BT0152
BT0153: BT0153 - hypothetical protein (NCBI ptt file), at 157,983 to 158,858
BT0153
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 155.834 kb on + strand, within BT0150 at 155.945 kb on + strand, within BT0150 at 155.953 kb on + strand, within BT0150 at 155.953 kb on + strand, within BT0150 at 156.197 kb on + strand at 156.244 kb on + strand at 156.244 kb on + strand at 156.365 kb on + strand at 156.366 kb on - strand at 156.600 kb on - strand, within BT0151 at 156.698 kb on + strand, within BT0151 at 156.699 kb on - strand, within BT0151 at 156.781 kb on + strand at 156.788 kb on - strand at 156.788 kb on - strand at 156.792 kb on + strand at 156.822 kb on + strand at 156.880 kb on - strand at 156.921 kb on + strand, within BT0152 at 156.958 kb on + strand, within BT0152 at 157.065 kb on + strand, within BT0152 at 157.270 kb on + strand, within BT0152 at 157.270 kb on + strand, within BT0152 at 157.292 kb on - strand, within BT0152 at 157.305 kb on + strand, within BT0152 at 157.306 kb on - strand, within BT0152 at 157.390 kb on + strand, within BT0152 at 157.391 kb on - strand, within BT0152 at 157.391 kb on - strand, within BT0152 at 157.395 kb on + strand, within BT0152 at 157.395 kb on + strand, within BT0152 at 157.396 kb on - strand, within BT0152 at 157.438 kb on + strand, within BT0152 at 157.480 kb on + strand, within BT0152 at 157.560 kb on - strand at 157.601 kb on - strand at 157.668 kb on + strand at 157.668 kb on + strand at 157.669 kb on - strand at 157.676 kb on + strand at 157.690 kb on + strand at 157.695 kb on + strand at 157.695 kb on + strand at 157.794 kb on - strand at 157.794 kb on - strand at 157.832 kb on + strand at 157.854 kb on + strand at 157.921 kb on - strand at 157.921 kb on - strand at 158.024 kb on + strand at 158.037 kb on - strand at 158.037 kb on - strand at 158.042 kb on - strand at 158.045 kb on + strand at 158.096 kb on + strand, within BT0153 at 158.096 kb on + strand, within BT0153 at 158.097 kb on - strand, within BT0153 at 158.218 kb on + strand, within BT0153 at 158.219 kb on - strand, within BT0153 at 158.222 kb on + strand, within BT0153 at 158.279 kb on - strand, within BT0153 at 158.455 kb on + strand, within BT0153 at 158.495 kb on - strand, within BT0153 at 158.568 kb on - strand, within BT0153
Per-strain Table
Position Strand Gene LocusTag Fraction SJC15_cps8_1MOI remove 155,834 + BT0150 0.83 -0.6 155,945 + BT0150 0.88 -1.0 155,953 + BT0150 0.88 +0.6 155,953 + BT0150 0.88 +1.0 156,197 + +1.0 156,244 + -0.0 156,244 + +1.0 156,365 + -1.4 156,366 - +1.0 156,600 - BT0151 0.60 +2.6 156,698 + BT0151 0.83 -1.6 156,699 - BT0151 0.83 -0.0 156,781 + +0.6 156,788 - -0.4 156,788 - +0.4 156,792 + -0.0 156,822 + -0.9 156,880 - +2.4 156,921 + BT0152 0.15 -0.4 156,958 + BT0152 0.19 -1.0 157,065 + BT0152 0.32 -0.0 157,270 + BT0152 0.57 -0.6 157,270 + BT0152 0.57 -1.4 157,292 - BT0152 0.60 -2.8 157,305 + BT0152 0.62 -2.0 157,306 - BT0152 0.62 -2.2 157,390 + BT0152 0.72 -0.1 157,391 - BT0152 0.72 -0.4 157,391 - BT0152 0.72 -2.1 157,395 + BT0152 0.73 -0.3 157,395 + BT0152 0.73 +0.1 157,396 - BT0152 0.73 -1.0 157,438 + BT0152 0.78 -3.2 157,480 + BT0152 0.83 -1.8 157,560 - -0.7 157,601 - -1.8 157,668 + -2.2 157,668 + -0.6 157,669 - -2.0 157,676 + -2.8 157,690 + -1.6 157,695 + +0.1 157,695 + -0.4 157,794 - +2.0 157,794 - -0.6 157,832 + +2.1 157,854 + -1.0 157,921 - -0.6 157,921 - -0.3 158,024 + -1.4 158,037 - -2.9 158,037 - +1.2 158,042 - -1.6 158,045 + -1.5 158,096 + BT0153 0.13 +0.8 158,096 + BT0153 0.13 +1.5 158,097 - BT0153 0.13 -1.6 158,218 + BT0153 0.27 -1.2 158,219 - BT0153 0.27 +1.0 158,222 + BT0153 0.27 -1.6 158,279 - BT0153 0.34 +1.0 158,455 + BT0153 0.54 +0.2 158,495 - BT0153 0.58 -0.8 158,568 - BT0153 0.67 -0.4
Or see this region's nucleotide sequence