Experiment: SJC15_cps8_1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0053 and BT0054 are separated by 52 nucleotides BT0054 and BT0055 are separated by 7 nucleotides
BT0053: BT0053 - glycosyltransferase (NCBI ptt file), at 48,834 to 49,958
BT0053
BT0054: BT0054 - putative glycosyltransferase (NCBI ptt file), at 50,011 to 51,132
BT0054
BT0055: BT0055 - putative glycosyltransferase (NCBI ptt file), at 51,140 to 52,255
BT0055
Position (kb) 50
51
52 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 49.021 kb on - strand, within BT0053 at 49.053 kb on - strand, within BT0053 at 49.088 kb on + strand, within BT0053 at 49.109 kb on - strand, within BT0053 at 49.134 kb on - strand, within BT0053 at 49.134 kb on - strand, within BT0053 at 49.348 kb on - strand, within BT0053 at 49.533 kb on - strand, within BT0053 at 49.609 kb on + strand, within BT0053 at 49.692 kb on - strand, within BT0053 at 49.728 kb on - strand, within BT0053 at 49.838 kb on - strand, within BT0053 at 49.878 kb on - strand at 49.963 kb on - strand at 50.003 kb on - strand at 50.099 kb on - strand at 50.115 kb on - strand at 50.139 kb on - strand, within BT0054 at 50.147 kb on + strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.240 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.286 kb on - strand, within BT0054 at 50.412 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.471 kb on + strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.540 kb on + strand, within BT0054 at 50.541 kb on - strand, within BT0054 at 50.557 kb on - strand, within BT0054 at 50.609 kb on + strand, within BT0054 at 50.648 kb on + strand, within BT0054 at 50.794 kb on + strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.802 kb on + strand, within BT0054 at 50.816 kb on - strand, within BT0054 at 50.825 kb on - strand, within BT0054 at 50.846 kb on + strand, within BT0054 at 50.943 kb on + strand, within BT0054 at 50.944 kb on - strand, within BT0054 at 50.971 kb on + strand, within BT0054 at 51.036 kb on + strand at 51.037 kb on - strand at 51.080 kb on - strand at 51.080 kb on - strand at 51.080 kb on - strand at 51.168 kb on - strand at 51.211 kb on - strand at 51.217 kb on + strand at 51.355 kb on - strand, within BT0055 at 51.490 kb on - strand, within BT0055 at 51.490 kb on - strand, within BT0055 at 51.532 kb on + strand, within BT0055 at 51.580 kb on - strand, within BT0055 at 51.582 kb on - strand, within BT0055 at 51.586 kb on - strand, within BT0055 at 51.714 kb on + strand, within BT0055 at 51.715 kb on - strand, within BT0055 at 51.715 kb on - strand, within BT0055 at 51.792 kb on - strand, within BT0055 at 51.792 kb on - strand at 51.825 kb on - strand, within BT0055 at 52.027 kb on - strand, within BT0055 at 52.027 kb on - strand, within BT0055
Per-strain Table
Position Strand Gene LocusTag Fraction SJC15_cps8_1MOI remove 49,021 - BT0053 0.17 +2.3 49,053 - BT0053 0.19 -0.2 49,088 + BT0053 0.23 -2.0 49,109 - BT0053 0.24 -1.8 49,134 - BT0053 0.27 -0.8 49,134 - BT0053 0.27 -1.4 49,348 - BT0053 0.46 -1.3 49,533 - BT0053 0.62 -2.1 49,609 + BT0053 0.69 -0.0 49,692 - BT0053 0.76 -1.3 49,728 - BT0053 0.79 -1.6 49,838 - BT0053 0.89 -1.4 49,878 - -1.8 49,963 - +0.2 50,003 - -2.7 50,099 - +1.6 50,115 - +3.3 50,139 - BT0054 0.11 +1.0 50,147 + BT0054 0.12 -2.2 50,188 - BT0054 0.16 -1.3 50,188 - BT0054 0.16 -3.1 50,240 - BT0054 0.20 -0.6 50,242 - BT0054 0.21 -1.6 50,242 - BT0054 0.21 -1.0 50,243 + BT0054 0.21 +0.6 50,243 + BT0054 0.21 -2.9 50,286 - BT0054 0.25 +2.3 50,412 - BT0054 0.36 -2.8 50,467 - BT0054 0.41 +0.4 50,467 - BT0054 0.41 -1.2 50,471 + BT0054 0.41 +2.1 50,472 - BT0054 0.41 +1.0 50,472 - BT0054 0.41 -1.6 50,475 - BT0054 0.41 -1.2 50,475 - BT0054 0.41 -0.5 50,540 + BT0054 0.47 -0.6 50,541 - BT0054 0.47 -1.0 50,557 - BT0054 0.49 -0.4 50,609 + BT0054 0.53 -2.5 50,648 + BT0054 0.57 +1.4 50,794 + BT0054 0.70 -2.5 50,797 - BT0054 0.70 -2.7 50,797 - BT0054 0.70 -1.6 50,802 + BT0054 0.70 -2.4 50,816 - BT0054 0.72 +0.6 50,825 - BT0054 0.73 +0.6 50,846 + BT0054 0.74 -0.6 50,943 + BT0054 0.83 -1.8 50,944 - BT0054 0.83 -1.9 50,971 + BT0054 0.86 -1.4 51,036 + -2.8 51,037 - -1.6 51,080 - -1.4 51,080 - -2.2 51,080 - +1.2 51,168 - -1.4 51,211 - -2.4 51,217 + -1.6 51,355 - BT0055 0.19 +0.2 51,490 - BT0055 0.31 -1.5 51,490 - BT0055 0.31 -1.4 51,532 + BT0055 0.35 -3.5 51,580 - BT0055 0.39 -2.0 51,582 - BT0055 0.40 -3.3 51,586 - BT0055 0.40 -0.9 51,714 + BT0055 0.51 -0.6 51,715 - BT0055 0.52 -0.0 51,715 - BT0055 0.52 -0.8 51,792 - BT0055 0.58 -0.9 51,792 - +1.0 51,825 - BT0055 0.61 -2.5 52,027 - BT0055 0.79 -0.0 52,027 - BT0055 0.79 +0.1
Or see this region's nucleotide sequence