Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15315

Experiment: L-Valine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine 10 mM (C)
3,430,704	+		PFLU_RS15305	0.72	+4.2
3,430,704	+		PFLU_RS15305	0.72	-1.6
3,430,704	+		PFLU_RS15305	0.72	+0.8
3,430,704	+		PFLU_RS15305	0.72	-0.9
3,430,704	+		PFLU_RS15305	0.72	-0.8
3,430,705	-		PFLU_RS15305	0.72	+0.1
3,430,705	-		PFLU_RS15305	0.72	-0.5
3,430,705	-		PFLU_RS15305	0.72	+1.5
3,430,705	-		PFLU_RS15305	0.72	-0.2
3,430,953	+		PFLU_RS15305	0.87	-2.8
3,430,953	+		PFLU_RS15305	0.87	-1.2
3,430,953	+		PFLU_RS15305	0.87	-1.5
3,430,953	+		PFLU_RS15305	0.87	+1.9
3,430,953	+		PFLU_RS15305	0.87	+0.9
3,430,953	+		PFLU_RS15305	0.87	+1.7
3,430,953	+		PFLU_RS15305	0.87	+0.5
3,430,953	+		PFLU_RS15305	0.87	-0.4
3,430,953	+		PFLU_RS15305	0.87	-1.9
3,430,953	+		PFLU_RS15305	0.87	+1.0
3,430,953	+		PFLU_RS15305	0.87	-0.5
3,430,953	+		PFLU_RS15305	0.87	-1.4
3,430,953	+		PFLU_RS15305	0.87	+0.8
3,430,953	+		PFLU_RS15305	0.87	+0.4
3,430,953	+		PFLU_RS15305	0.87	-2.6
3,430,953	+		PFLU_RS15305	0.87	-1.5
3,430,953	+		PFLU_RS15305	0.87	+1.5
3,430,953	+		PFLU_RS15305	0.87	-0.1
3,430,953	+		PFLU_RS15305	0.87	-1.5
3,430,953	+		PFLU_RS15305	0.87	-1.1
3,430,953	+		PFLU_RS15305	0.87	-0.7
3,430,953	+		PFLU_RS15305	0.87	-0.8
3,430,954	-		PFLU_RS15305	0.87	-0.8
3,430,954	-		PFLU_RS15305	0.87	-1.5
3,430,954	-		PFLU_RS15305	0.87	-0.8
3,430,954	-		PFLU_RS15305	0.87	+1.2
3,430,954	-		PFLU_RS15305	0.87	+0.6
3,430,954	-		PFLU_RS15305	0.87	+1.0
3,430,954	-		PFLU_RS15305	0.87	-1.4
3,430,954	-		PFLU_RS15305	0.87	+0.0
3,430,954	-		PFLU_RS15305	0.87	-1.1
3,430,954	-		PFLU_RS15305	0.87	-1.5
3,430,954	-		PFLU_RS15305	0.87	+1.2
3,430,954	-		PFLU_RS15305	0.87	+0.2
3,430,954	-		PFLU_RS15305	0.87	+0.5
3,430,954	-		PFLU_RS15305	0.87	-0.5
3,430,954	-		PFLU_RS15305	0.87	+0.5
3,430,954	-		PFLU_RS15305	0.87	-2.6
3,430,954	-		PFLU_RS15305	0.87	-0.5
3,431,010	-				-0.1
3,431,010	-				-0.0
3,431,010	-				-0.3
3,431,086	-				-2.1
3,431,086	-				-0.9
3,431,122	+				+1.4
3,431,122	+				-0.3
3,431,122	+				+1.1
3,431,123	-				+1.4
3,431,123	-				+0.5
3,431,123	-				+1.0
3,431,130	+				+0.3
3,431,130	+				-1.7
3,431,130	+				+1.0
3,431,131	-				+1.2
3,431,131	-				+0.7
3,431,131	-				-0.7
3,431,131	-				+0.5
3,431,131	-				+0.4
3,431,131	-				-1.5
3,431,134	-				+0.5
3,431,134	-				+0.7
3,431,134	-				-0.1
3,431,231	+				-1.5
3,431,231	+				-1.5
3,431,231	+				-0.5
3,431,231	+				-0.8
3,431,232	-				+2.5
3,431,232	-				+2.8
3,431,232	-				-1.2
3,431,232	-				-1.8
3,431,232	-				+5.9
3,431,232	-				-0.5
3,431,232	-				-0.1
3,431,235	+				-0.5
3,431,236	-				-1.1
3,431,236	-				+2.5
3,431,236	-				+0.5
3,431,236	-				+1.5
3,431,257	-				+1.0
3,431,260	+				+2.8
3,431,260	+				-1.9
3,431,261	-				+0.5
3,431,292	-				-2.9
3,431,339	+				-1.3
3,431,340	-				-0.8
3,431,340	-				-0.4
3,431,340	-				-0.8
3,431,340	-				+0.9
3,431,346	+				+3.6
3,431,347	-				-2.2
3,431,347	-				+2.6
3,431,397	-		PFLU_RS15310	0.22	+0.9
3,431,449	+		PFLU_RS15310	0.45	+0.5
3,431,449	+		PFLU_RS15310	0.45	+1.6
3,431,450	-		PFLU_RS15310	0.46	-1.7
3,431,450	-		PFLU_RS15310	0.46	-0.1
3,431,495	-		PFLU_RS15310	0.66	+3.1
3,431,590	-				+0.6
3,431,797	+				+0.5
3,431,897	+		PFLU_RS15315	0.14	-0.4
3,431,898	-		PFLU_RS15315	0.14	-1.7
3,431,910	-		PFLU_RS15315	0.15	-0.8
3,431,945	+		PFLU_RS15315	0.17	+0.2
3,432,005	+		PFLU_RS15315	0.22	+1.5
3,432,005	+		PFLU_RS15315	0.22	-1.5
3,432,005	+		PFLU_RS15315	0.22	-1.9
3,432,005	+		PFLU_RS15315	0.22	+1.5
3,432,006	-		PFLU_RS15315	0.22	+1.3
3,432,118	+		PFLU_RS15315	0.30	-1.0
3,432,118	+		PFLU_RS15315	0.30	+1.0
3,432,118	+		PFLU_RS15315	0.30	+0.5
3,432,119	-		PFLU_RS15315	0.30	+0.0
3,432,261	-		PFLU_RS15315	0.40	-2.1
3,432,261	-		PFLU_RS15315	0.40	+0.1
3,432,403	+		PFLU_RS15315	0.50	-0.6
3,432,403	+		PFLU_RS15315	0.50	+3.3
3,432,404	-		PFLU_RS15315	0.50	+4.3
3,432,412	+		PFLU_RS15315	0.50	+1.5
3,432,412	+		PFLU_RS15315	0.50	+0.8
3,432,413	-		PFLU_RS15315	0.51	-2.5
3,432,413	-		PFLU_RS15315	0.51	-0.7
3,432,427	+		PFLU_RS15315	0.52	+1.7
3,432,427	+		PFLU_RS15315	0.52	+2.5
3,432,428	-		PFLU_RS15315	0.52	+0.7
3,432,428	-		PFLU_RS15315	0.52	-0.8
3,432,428	-		PFLU_RS15315	0.52	+0.5
3,432,428	-		PFLU_RS15315	0.52	+3.7
3,432,428	-		PFLU_RS15315	0.52	-0.3
3,432,491	+		PFLU_RS15315	0.56	-1.1
3,432,491	+		PFLU_RS15315	0.56	+0.5
3,432,492	-		PFLU_RS15315	0.56	+1.7
3,432,598	+		PFLU_RS15315	0.64	-0.6
3,432,730	+		PFLU_RS15315	0.73	+3.8
3,432,730	+		PFLU_RS15315	0.73	-1.7
3,432,730	+		PFLU_RS15315	0.73	+0.5
3,432,730	+		PFLU_RS15315	0.73	+1.5
3,432,731	-		PFLU_RS15315	0.73	+2.0
3,432,763	+		PFLU_RS15315	0.75	+1.1
3,432,764	-		PFLU_RS15315	0.75	-0.1
3,432,901	-		PFLU_RS15315	0.85	+0.1
3,432,963	+		PFLU_RS15315	0.90	+1.4
3,432,992	-				-1.5
3,433,024	+				+2.5
3,433,024	+				-1.8
3,433,024	+				-0.8
3,433,024	+				+1.9
3,433,024	+				-1.8
3,433,024	+				+1.5
3,433,025	-				+1.4
3,433,025	-				+0.5
3,433,025	-				+2.7
3,433,025	-				-0.1
3,433,025	-				-2.2
3,433,025	-				-0.1
3,433,030	+				-0.5
3,433,030	+				-1.9
3,433,030	+				-0.5
3,433,030	+				-1.5
3,433,030	+				+0.9
3,433,030	+				-0.1
3,433,030	+				-0.1
3,433,030	+				+1.5
3,433,030	+				-1.2
3,433,030	+				+2.7
3,433,030	+				+0.5
3,433,031	-				+1.8
3,433,031	-				-0.0
3,433,031	-				-0.1
3,433,031	-				+2.5
3,433,031	-				+0.5
3,433,031	-				-1.3
3,433,031	-				+0.9
3,433,031	-				-2.1
3,433,031	-				-1.4
3,433,031	-				+1.9
3,433,031	-				-1.7
3,433,031	-				+2.0
3,433,031	-				+1.7
3,433,092	-				-0.5
3,433,092	-				-0.0
3,433,094	-				-1.2
3,433,101	+				+1.8
3,433,101	+				-0.1
3,433,101	+				-1.5
3,433,101	+				+1.2
3,433,101	+				-1.1
3,433,101	+				-0.9
3,433,101	+				+0.2
3,433,101	+				+2.0
3,433,101	+				-0.8
3,433,101	+				+0.2
3,433,102	-				-0.5
3,433,102	-				-0.6
3,433,102	-				-1.9
3,433,102	-				+1.9
3,433,102	-				+0.4
3,433,102	-				+0.2
3,433,102	-				-0.1
3,433,102	-				-0.7
3,433,102	-				-0.5
3,433,103	+				+1.8
3,433,103	+				-1.7
3,433,104	-				-1.0
3,433,104	-				+0.8
3,433,123	+				-0.8
3,433,123	+				-0.8
3,433,123	+				-1.5
3,433,123	+				+2.9
3,433,123	+				-2.4
3,433,123	+				+0.6
3,433,124	-				+1.3
3,433,124	-				+3.5
3,433,124	-				+0.0
3,433,124	-				-0.5
3,433,124	-				-2.1
3,433,124	-				-1.6
3,433,124	-				-1.5
3,433,133	+				+1.5
3,433,204	+				+1.0
3,433,204	+				+0.8
3,433,207	+				-0.5
3,433,208	-				+1.9
3,433,208	-				-1.8
3,433,208	-				-0.1
3,433,234	+				+0.9
3,433,234	+				-0.1
3,433,234	+				-1.2
3,433,235	-				-0.6
3,433,273	+				+2.0
3,433,273	+				-1.9
3,433,273	+				+0.2
3,433,273	+				+0.2
3,433,273	+				+0.6
3,433,274	-				+0.5
3,433,534	+		PFLU_RS15320	0.29	-0.1
3,433,534	+		PFLU_RS15320	0.29	+3.1
3,433,535	-		PFLU_RS15320	0.29	-0.4
3,433,576	+		PFLU_RS15320	0.32	+0.5
3,433,588	+		PFLU_RS15320	0.33	-0.8
3,433,588	+		PFLU_RS15320	0.33	+0.8
3,433,588	+		PFLU_RS15320	0.33	-0.1
3,433,589	-		PFLU_RS15320	0.33	-1.5
3,433,589	-		PFLU_RS15320	0.33	+1.5
3,433,589	-		PFLU_RS15320	0.33	-0.1
3,433,589	-		PFLU_RS15320	0.33	+0.0
3,433,589	-		PFLU_RS15320	0.33	+3.2
3,433,589	-		PFLU_RS15320	0.33	+1.1
3,433,589	-		PFLU_RS15320	0.33	+3.5
3,433,589	-		PFLU_RS15320	0.33	+2.6
3,433,630	+		PFLU_RS15320	0.36	-0.1
3,433,648	-		PFLU_RS15320	0.38	+1.0
3,433,648	-		PFLU_RS15320	0.38	+1.2
3,433,671	+		PFLU_RS15320	0.40	-2.1
3,433,672	-		PFLU_RS15320	0.40	+0.5
3,433,672	-		PFLU_RS15320	0.40	-1.6
3,433,756	+		PFLU_RS15320	0.46	+2.5
3,433,756	+		PFLU_RS15320	0.46	+2.4
3,433,756	+		PFLU_RS15320	0.46	+0.7
3,433,756	+		PFLU_RS15320	0.46	-0.4
3,433,756	+		PFLU_RS15320	0.46	+0.4
3,433,756	+		PFLU_RS15320	0.46	+1.5
3,433,757	-		PFLU_RS15320	0.46	-0.8
3,433,831	-		PFLU_RS15320	0.52	-1.5
3,433,912	+		PFLU_RS15320	0.58	-2.1
3,434,056	+		PFLU_RS15320	0.68	-3.1
3,434,056	+		PFLU_RS15320	0.68	-0.3
3,434,056	+		PFLU_RS15320	0.68	+0.5
3,434,056	+		PFLU_RS15320	0.68	+1.4
3,434,056	+		PFLU_RS15320	0.68	+0.9
3,434,056	+		PFLU_RS15320	0.68	-1.5
3,434,057	-		PFLU_RS15320	0.69	+0.5
3,434,057	-		PFLU_RS15320	0.69	+0.5
3,434,057	-		PFLU_RS15320	0.69	-0.1
3,434,059	+		PFLU_RS15320	0.69	+1.5
3,434,059	+		PFLU_RS15320	0.69	+1.7
3,434,059	+		PFLU_RS15320	0.69	+0.9
3,434,059	+		PFLU_RS15320	0.69	+1.8
3,434,059	+		PFLU_RS15320	0.69	-2.6
3,434,059	+		PFLU_RS15320	0.69	-1.3
3,434,059	+		PFLU_RS15320	0.69	+0.8
3,434,059	+		PFLU_RS15320	0.69	-0.5
3,434,059	+		PFLU_RS15320	0.69	+1.2
3,434,060	-		PFLU_RS15320	0.69	-2.6
3,434,060	-		PFLU_RS15320	0.69	-1.5