Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19970 and BWI76_RS19975 overlap by 4 nucleotides BWI76_RS19975 and BWI76_RS19980 are separated by 23 nucleotides BWI76_RS19980 and BWI76_RS19985 are separated by 14 nucleotides
BWI76_RS19970: BWI76_RS19970 - anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 4,183,341 to 4,184,600
_RS19970
BWI76_RS19975: BWI76_RS19975 - sn-glycerol-3-phosphate dehydrogenase subunit C, at 4,184,597 to 4,185,776
_RS19975
BWI76_RS19980: BWI76_RS19980 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 4,185,800 to 4,186,603
_RS19980
BWI76_RS19985: BWI76_RS19985 - MFS transporter, at 4,186,618 to 4,187,907
_RS19985
Position (kb) 4184
4185
4186 Strain fitness (log2 ratio) -1
0
1 at 4183.647 kb on - strand, within BWI76_RS19970 at 4183.655 kb on + strand, within BWI76_RS19970 at 4184.257 kb on + strand, within BWI76_RS19970 at 4184.594 kb on + strand at 4184.825 kb on - strand, within BWI76_RS19975 at 4185.312 kb on + strand, within BWI76_RS19975 at 4185.313 kb on - strand at 4185.319 kb on + strand, within BWI76_RS19975 at 4185.319 kb on + strand, within BWI76_RS19975 at 4185.327 kb on - strand at 4185.327 kb on - strand, within BWI76_RS19975 at 4185.327 kb on - strand, within BWI76_RS19975 at 4185.327 kb on - strand, within BWI76_RS19975 at 4185.522 kb on - strand, within BWI76_RS19975 at 4185.863 kb on - strand at 4185.920 kb on + strand, within BWI76_RS19980 at 4186.368 kb on - strand, within BWI76_RS19980 at 4186.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,183,647 - BWI76_RS19970 0.24 +0.1 4,183,655 + BWI76_RS19970 0.25 -0.5 4,184,257 + BWI76_RS19970 0.73 -0.2 4,184,594 + +0.4 4,184,825 - BWI76_RS19975 0.19 -0.8 4,185,312 + BWI76_RS19975 0.61 -1.5 4,185,313 - -0.1 4,185,319 + BWI76_RS19975 0.61 -0.5 4,185,319 + BWI76_RS19975 0.61 -0.3 4,185,327 - -0.8 4,185,327 - BWI76_RS19975 0.62 -0.7 4,185,327 - BWI76_RS19975 0.62 +1.1 4,185,327 - BWI76_RS19975 0.62 -0.7 4,185,522 - BWI76_RS19975 0.78 -1.3 4,185,863 - +0.4 4,185,920 + BWI76_RS19980 0.15 +0.0 4,186,368 - BWI76_RS19980 0.71 +0.1 4,186,536 - +0.6
Or see this region's nucleotide sequence