Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07960

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07950 and BWI76_RS07955 are separated by 199 nucleotidesBWI76_RS07955 and BWI76_RS07960 are separated by 155 nucleotidesBWI76_RS07960 and BWI76_RS07965 are separated by 92 nucleotides BWI76_RS07950: BWI76_RS07950 - universal stress protein G, at 1,689,623 to 1,690,051 _RS07950 BWI76_RS07955: BWI76_RS07955 - nucleoside diphosphate kinase regulator, at 1,690,251 to 1,690,661 _RS07955 BWI76_RS07960: BWI76_RS07960 - ribonuclease I, at 1,690,817 to 1,691,611 _RS07960 BWI76_RS07965: BWI76_RS07965 - anaerobic C4-dicarboxylate transporter DcuC, at 1,691,704 to 1,693,077 _RS07965 Position (kb) 1690 1691 1692Strain fitness (log2 ratio) -1 0 1 2at 1689.882 kb on - strand, within BWI76_RS07950at 1689.882 kb on - strand, within BWI76_RS07950at 1689.937 kb on - strand, within BWI76_RS07950at 1690.194 kb on - strandat 1690.363 kb on - strand, within BWI76_RS07955at 1690.482 kb on + strand, within BWI76_RS07955at 1691.003 kb on - strand, within BWI76_RS07960at 1691.024 kb on - strand, within BWI76_RS07960at 1691.291 kb on + strand, within BWI76_RS07960at 1691.296 kb on + strand, within BWI76_RS07960at 1691.438 kb on - strand, within BWI76_RS07960at 1691.558 kb on + strandat 1691.625 kb on + strandat 1691.703 kb on - strandat 1691.772 kb on - strandat 1691.839 kb on - strandat 1691.957 kb on + strand, within BWI76_RS07965at 1692.092 kb on - strand, within BWI76_RS07965at 1692.105 kb on + strand, within BWI76_RS07965at 1692.351 kb on + strand, within BWI76_RS07965

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,689,882 - BWI76_RS07950 0.60 +0.2
1,689,882 - BWI76_RS07950 0.60 -0.0
1,689,937 - BWI76_RS07950 0.73 +0.7
1,690,194 - -0.5
1,690,363 - BWI76_RS07955 0.27 +0.3
1,690,482 + BWI76_RS07955 0.56 +0.0
1,691,003 - BWI76_RS07960 0.23 -0.1
1,691,024 - BWI76_RS07960 0.26 +0.2
1,691,291 + BWI76_RS07960 0.60 -0.6
1,691,296 + BWI76_RS07960 0.60 -0.8
1,691,438 - BWI76_RS07960 0.78 -0.3
1,691,558 + -0.0
1,691,625 + +2.5
1,691,703 - -0.4
1,691,772 - +0.3
1,691,839 - -1.5
1,691,957 + BWI76_RS07965 0.18 -0.2
1,692,092 - BWI76_RS07965 0.28 -0.2
1,692,105 + BWI76_RS07965 0.29 -1.3
1,692,351 + BWI76_RS07965 0.47 +0.1

Or see this region's nucleotide sequence